Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03310

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_03300 and OKFHMN_03305 overlap by 4 nucleotidesOKFHMN_03305 and OKFHMN_03310 are separated by 453 nucleotidesOKFHMN_03310 and rusA overlap by 4 nucleotidesrusA and OKFHMN_03320 are separated by 12 nucleotides OKFHMN_03300: OKFHMN_03300 - TciB/TerA-like protein, at 521,321 to 521,488 _03300 OKFHMN_03305: OKFHMN_03305 - TciA/TerB-like protein, at 521,485 to 521,631 _03305 OKFHMN_03310: OKFHMN_03310 - antitermination protein, at 522,085 to 522,906 _03310 OKFHMN_03315: rusA - Endodeoxyribonuclease RusA, at 522,903 to 523,277 rusA OKFHMN_03320: OKFHMN_03320 - DUF968 domain-containing protein, at 523,290 to 524,339 _03320 Position (kb) 522 523Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 521.896 kb on - strandat 522.186 kb on + strand, within OKFHMN_03310at 522.187 kb on - strand, within OKFHMN_03310at 522.226 kb on - strand, within OKFHMN_03310at 522.298 kb on - strand, within OKFHMN_03310at 522.308 kb on - strand, within OKFHMN_03310at 522.407 kb on - strand, within OKFHMN_03310at 522.616 kb on - strand, within OKFHMN_03310at 522.616 kb on - strand, within OKFHMN_03310at 522.616 kb on - strand, within OKFHMN_03310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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521,896 - -1.0
522,186 + OKFHMN_03310 0.12 +1.9
522,187 - OKFHMN_03310 0.12 +0.8
522,226 - OKFHMN_03310 0.17 +0.8
522,298 - OKFHMN_03310 0.26 -0.2
522,308 - OKFHMN_03310 0.27 -0.4
522,407 - OKFHMN_03310 0.39 +0.7
522,616 - OKFHMN_03310 0.65 -2.0
522,616 - OKFHMN_03310 0.65 -2.9
522,616 - OKFHMN_03310 0.65 +0.0

Or see this region's nucleotide sequence