Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01750

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynbC and ynbB are separated by 15 nucleotidesynbB and ynbA overlap by 1 nucleotidesynbA and ydbD are separated by 170 nucleotides OKFHMN_01745: ynbC - Uncharacterized protein YnbC, at 254,338 to 256,095 ynbC OKFHMN_01750: ynbB - Uncharacterized protein YnbB, at 256,111 to 257,007 ynbB OKFHMN_01755: ynbA - Inner membrane protein YnbA, at 257,007 to 257,612 ynbA OKFHMN_01760: ydbD - Uncharacterized protein YdbD, at 257,783 to 260,089 ydbD Position (kb) 256 257 258Strain fitness (log2 ratio) -2 -1 0 1 2at 255.117 kb on + strand, within ynbCat 255.251 kb on - strand, within ynbCat 255.361 kb on + strand, within ynbCat 255.943 kb on - strandat 256.285 kb on + strand, within ynbBat 257.254 kb on - strand, within ynbA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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255,117 + ynbC OKFHMN_01745 0.44 -2.3
255,251 - ynbC OKFHMN_01745 0.52 -1.6
255,361 + ynbC OKFHMN_01745 0.58 +1.9
255,943 - +0.5
256,285 + ynbB OKFHMN_01750 0.19 +0.8
257,254 - ynbA OKFHMN_01755 0.41 -2.5

Or see this region's nucleotide sequence