Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydcK and rimL are separated by 234 nucleotides rimL and ydcH are separated by 62 nucleotides ydcH and opgD are separated by 139 nucleotides opgD and ydcJ are separated by 260 nucleotides
OKFHMN_01630: ydcK - YdcK family protein, at 233,108 to 234,088
ydcK
OKFHMN_01635: rimL - 50S ribosomal protein L7/L12-serine acetyltransferase, at 234,323 to 234,619
rimL
OKFHMN_01640: ydcH - Uncharacterized protein YdcH, at 234,682 to 234,906
ydcH
OKFHMN_01645: opgD - glucan biosynthesis protein OpgD, at 235,046 to 236,665
opgD
OKFHMN_01650: ydcJ - Uncharacterized protein YdcJ, at 236,926 to 238,269
ydcJ
Position (kb) 235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 234.170 kb on - strand at 234.582 kb on - strand, within rimL at 234.850 kb on - strand, within ydcH at 234.937 kb on + strand at 235.101 kb on + strand at 235.127 kb on - strand at 235.127 kb on - strand at 235.150 kb on - strand at 235.150 kb on - strand at 235.150 kb on - strand at 235.233 kb on + strand, within opgD at 235.234 kb on - strand, within opgD at 236.133 kb on + strand, within opgD at 236.134 kb on - strand, within opgD at 236.158 kb on - strand, within opgD at 236.253 kb on - strand, within opgD at 236.445 kb on + strand, within opgD at 236.458 kb on + strand, within opgD at 236.777 kb on - strand at 236.806 kb on - strand at 236.809 kb on - strand at 236.833 kb on + strand at 237.117 kb on - strand, within ydcJ at 237.469 kb on - strand, within ydcJ
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 234,170 - -1.6 234,582 - rimL OKFHMN_01635 0.87 -1.6 234,850 - ydcH OKFHMN_01640 0.75 -0.2 234,937 + -3.7 235,101 + +0.4 235,127 - +1.4 235,127 - -0.4 235,150 - +0.7 235,150 - +0.5 235,150 - +0.7 235,233 + opgD OKFHMN_01645 0.12 -1.8 235,234 - opgD OKFHMN_01645 0.12 +0.7 236,133 + opgD OKFHMN_01645 0.67 +0.8 236,134 - opgD OKFHMN_01645 0.67 +0.2 236,158 - opgD OKFHMN_01645 0.69 +0.7 236,253 - opgD OKFHMN_01645 0.75 -0.7 236,445 + opgD OKFHMN_01645 0.86 -0.4 236,458 + opgD OKFHMN_01645 0.87 -1.5 236,777 - -0.6 236,806 - +0.3 236,809 - -1.5 236,833 + -2.2 237,117 - ydcJ OKFHMN_01650 0.14 -0.6 237,469 - ydcJ OKFHMN_01650 0.40 -0.6
Or see this region's nucleotide sequence