Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01565

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpatD and ydcV are separated by 21 nucleotidesydcV and potB overlap by 11 nucleotidespotB and ydcT are separated by 0 nucleotides OKFHMN_01555: patD - aminobutyraldehyde dehydrogenase, at 218,301 to 219,725 patD OKFHMN_01560: ydcV - Inner membrane ABC transporter permease protein YdcV, at 219,747 to 220,541 ydcV OKFHMN_01565: potB - spermidine/putrescine ABC transporter permease, at 220,531 to 221,472 potB OKFHMN_01570: ydcT - Uncharacterized ABC transporter ATP-binding protein YdcT, at 221,473 to 222,486 ydcT Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2at 219.816 kb on - strandat 220.000 kb on - strand, within ydcVat 220.095 kb on - strand, within ydcVat 220.108 kb on - strand, within ydcVat 220.231 kb on - strand, within ydcVat 220.896 kb on - strand, within potBat 221.039 kb on - strand, within potBat 221.304 kb on - strand, within potBat 222.022 kb on + strand, within ydcT

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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219,816 - -2.4
220,000 - ydcV OKFHMN_01560 0.32 +1.1
220,095 - ydcV OKFHMN_01560 0.44 -0.7
220,108 - ydcV OKFHMN_01560 0.45 +0.3
220,231 - ydcV OKFHMN_01560 0.61 +2.0
220,896 - potB OKFHMN_01565 0.39 -1.8
221,039 - potB OKFHMN_01565 0.54 +1.1
221,304 - potB OKFHMN_01565 0.82 +0.3
222,022 + ydcT OKFHMN_01570 0.54 +0.3

Or see this region's nucleotide sequence