Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01315

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdosP and ddpX are separated by 257 nucleotidesddpX and ddpA are separated by 13 nucleotides OKFHMN_01310: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 165,329 to 166,480 dosP OKFHMN_01315: ddpX - D-alanyl-D-alanine dipeptidase, at 166,738 to 167,319 ddpX OKFHMN_01320: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 167,333 to 168,883 ddpA Position (kb) 166 167 168Strain fitness (log2 ratio) -1 0 1 2at 166.206 kb on + strand, within dosPat 166.722 kb on + strandat 166.818 kb on + strand, within ddpXat 166.836 kb on + strand, within ddpXat 166.837 kb on - strand, within ddpXat 166.936 kb on + strand, within ddpXat 167.413 kb on - strandat 167.771 kb on - strand, within ddpAat 168.168 kb on - strand, within ddpAat 168.242 kb on + strand, within ddpA

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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166,206 + dosP OKFHMN_01310 0.76 -0.5
166,722 + +1.8
166,818 + ddpX OKFHMN_01315 0.14 +1.0
166,836 + ddpX OKFHMN_01315 0.17 +0.1
166,837 - ddpX OKFHMN_01315 0.17 -0.6
166,936 + ddpX OKFHMN_01315 0.34 +0.7
167,413 - -0.2
167,771 - ddpA OKFHMN_01320 0.28 +0.6
168,168 - ddpA OKFHMN_01320 0.54 +1.1
168,242 + ddpA OKFHMN_01320 0.59 -1.3

Or see this region's nucleotide sequence