Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gspH and gspG overlap by 4 nucleotides gspG and gspF are separated by 30 nucleotides gspF and gspE are separated by 1 nucleotides
OKFHMN_00265: gspH - type II secretion system minor pseudopilin GspH, at 53,998 to 54,552
gspH
OKFHMN_00270: gspG - type II secretion system major pseudopilin GspG, at 54,549 to 54,983
gspG
OKFHMN_00275: gspF - type II secretion system inner membrane protein GspF, at 55,014 to 56,237
gspF
OKFHMN_00280: gspE - type II secretion system ATPase GspE, at 56,239 to 57,744
gspE
Position (kb) 55
56
57 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.185 kb on + strand, within gspH at 54.263 kb on + strand, within gspH at 54.263 kb on + strand, within gspH at 54.264 kb on - strand, within gspH at 54.264 kb on - strand, within gspH at 54.264 kb on - strand, within gspH at 54.277 kb on - strand, within gspH at 54.293 kb on - strand, within gspH at 54.293 kb on - strand, within gspH at 54.333 kb on + strand, within gspH at 54.393 kb on + strand, within gspH at 54.393 kb on + strand, within gspH at 54.393 kb on + strand, within gspH at 54.394 kb on - strand, within gspH at 54.404 kb on + strand, within gspH at 54.405 kb on - strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.475 kb on + strand, within gspH at 54.476 kb on - strand, within gspH at 54.476 kb on - strand, within gspH at 54.476 kb on - strand, within gspH at 54.479 kb on - strand, within gspH at 54.585 kb on - strand at 54.629 kb on + strand, within gspG at 54.644 kb on - strand, within gspG at 54.644 kb on - strand, within gspG at 54.658 kb on - strand, within gspG at 54.667 kb on + strand, within gspG at 54.668 kb on - strand, within gspG at 54.704 kb on + strand, within gspG at 54.704 kb on + strand, within gspG at 54.721 kb on + strand, within gspG at 54.801 kb on - strand, within gspG at 54.811 kb on + strand, within gspG at 54.811 kb on + strand, within gspG at 54.812 kb on - strand, within gspG at 54.878 kb on + strand, within gspG at 54.878 kb on + strand, within gspG at 54.879 kb on - strand, within gspG at 54.933 kb on + strand, within gspG at 54.933 kb on + strand, within gspG at 54.943 kb on - strand at 54.956 kb on + strand at 54.956 kb on + strand at 54.957 kb on - strand at 54.957 kb on - strand at 55.003 kb on + strand at 55.004 kb on - strand at 55.019 kb on + strand at 55.020 kb on - strand at 55.020 kb on - strand at 55.071 kb on - strand at 55.235 kb on + strand, within gspF at 55.307 kb on + strand, within gspF at 55.311 kb on + strand, within gspF at 55.391 kb on + strand, within gspF at 55.392 kb on - strand, within gspF at 55.414 kb on + strand, within gspF at 55.414 kb on + strand, within gspF at 55.415 kb on - strand, within gspF at 55.415 kb on - strand, within gspF at 55.506 kb on + strand, within gspF at 55.506 kb on + strand, within gspF at 55.506 kb on + strand, within gspF at 55.507 kb on - strand, within gspF at 55.509 kb on + strand, within gspF at 55.509 kb on + strand, within gspF at 55.548 kb on + strand, within gspF at 55.549 kb on - strand, within gspF at 55.604 kb on + strand, within gspF at 55.604 kb on + strand, within gspF at 55.608 kb on + strand, within gspF at 55.629 kb on - strand, within gspF at 55.667 kb on + strand, within gspF at 55.668 kb on - strand, within gspF at 55.668 kb on - strand, within gspF at 55.717 kb on + strand, within gspF at 55.768 kb on + strand, within gspF at 55.768 kb on + strand, within gspF at 55.768 kb on + strand, within gspF at 55.923 kb on + strand, within gspF at 56.126 kb on + strand at 56.222 kb on - strand at 56.237 kb on + strand at 56.306 kb on - strand at 56.342 kb on + strand at 56.343 kb on - strand at 56.368 kb on - strand at 56.390 kb on + strand, within gspE at 56.391 kb on - strand, within gspE at 56.454 kb on - strand, within gspE at 56.454 kb on - strand, within gspE at 56.530 kb on + strand, within gspE at 56.531 kb on - strand, within gspE at 56.608 kb on + strand, within gspE at 56.676 kb on + strand, within gspE at 56.677 kb on - strand, within gspE at 56.682 kb on + strand, within gspE at 56.682 kb on + strand, within gspE at 56.683 kb on - strand, within gspE at 56.683 kb on - strand, within gspE at 56.683 kb on - strand, within gspE at 56.683 kb on - strand, within gspE at 56.683 kb on - strand, within gspE at 56.683 kb on - strand, within gspE at 56.686 kb on + strand, within gspE at 56.687 kb on - strand, within gspE at 56.687 kb on - strand, within gspE at 56.791 kb on + strand, within gspE at 56.871 kb on - strand, within gspE at 56.895 kb on + strand, within gspE at 56.895 kb on + strand, within gspE at 56.895 kb on + strand, within gspE at 56.896 kb on - strand, within gspE at 56.896 kb on - strand, within gspE at 56.926 kb on + strand, within gspE at 56.936 kb on + strand, within gspE at 56.936 kb on + strand, within gspE at 56.936 kb on + strand, within gspE at 57.069 kb on + strand, within gspE at 57.070 kb on - strand, within gspE at 57.079 kb on + strand, within gspE at 57.082 kb on + strand, within gspE at 57.083 kb on - strand, within gspE at 57.157 kb on - strand, within gspE at 57.222 kb on + strand, within gspE at 57.222 kb on + strand, within gspE
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 54,185 + gspH OKFHMN_00265 0.34 +0.3 54,263 + gspH OKFHMN_00265 0.48 +0.1 54,263 + gspH OKFHMN_00265 0.48 +0.5 54,264 - gspH OKFHMN_00265 0.48 -1.9 54,264 - gspH OKFHMN_00265 0.48 -2.8 54,264 - gspH OKFHMN_00265 0.48 -0.6 54,277 - gspH OKFHMN_00265 0.50 +1.0 54,293 - gspH OKFHMN_00265 0.53 +0.1 54,293 - gspH OKFHMN_00265 0.53 +0.5 54,333 + gspH OKFHMN_00265 0.60 +0.2 54,393 + gspH OKFHMN_00265 0.71 +0.6 54,393 + gspH OKFHMN_00265 0.71 +0.7 54,393 + gspH OKFHMN_00265 0.71 -0.6 54,394 - gspH OKFHMN_00265 0.71 -0.6 54,404 + gspH OKFHMN_00265 0.73 -2.1 54,405 - gspH OKFHMN_00265 0.73 +0.1 54,475 + gspH OKFHMN_00265 0.86 -0.7 54,475 + gspH OKFHMN_00265 0.86 -0.2 54,475 + gspH OKFHMN_00265 0.86 -0.8 54,475 + gspH OKFHMN_00265 0.86 +1.4 54,475 + gspH OKFHMN_00265 0.86 -0.6 54,475 + gspH OKFHMN_00265 0.86 -1.7 54,476 - gspH OKFHMN_00265 0.86 +0.2 54,476 - gspH OKFHMN_00265 0.86 +1.1 54,476 - gspH OKFHMN_00265 0.86 +0.3 54,479 - gspH OKFHMN_00265 0.87 -0.4 54,585 - +1.6 54,629 + gspG OKFHMN_00270 0.18 -0.2 54,644 - gspG OKFHMN_00270 0.22 +0.1 54,644 - gspG OKFHMN_00270 0.22 -2.2 54,658 - gspG OKFHMN_00270 0.25 -0.5 54,667 + gspG OKFHMN_00270 0.27 -0.4 54,668 - gspG OKFHMN_00270 0.27 +0.2 54,704 + gspG OKFHMN_00270 0.36 +0.5 54,704 + gspG OKFHMN_00270 0.36 +0.2 54,721 + gspG OKFHMN_00270 0.40 -3.0 54,801 - gspG OKFHMN_00270 0.58 -0.2 54,811 + gspG OKFHMN_00270 0.60 +0.1 54,811 + gspG OKFHMN_00270 0.60 +0.2 54,812 - gspG OKFHMN_00270 0.60 -0.8 54,878 + gspG OKFHMN_00270 0.76 -0.2 54,878 + gspG OKFHMN_00270 0.76 -1.0 54,879 - gspG OKFHMN_00270 0.76 -2.2 54,933 + gspG OKFHMN_00270 0.88 +0.6 54,933 + gspG OKFHMN_00270 0.88 -2.2 54,943 - -0.1 54,956 + -0.6 54,956 + +1.0 54,957 - -0.9 54,957 - -0.1 55,003 + +0.1 55,004 - -1.9 55,019 + +0.2 55,020 - -2.7 55,020 - +0.1 55,071 - +0.4 55,235 + gspF OKFHMN_00275 0.18 +0.8 55,307 + gspF OKFHMN_00275 0.24 +1.6 55,311 + gspF OKFHMN_00275 0.24 +0.7 55,391 + gspF OKFHMN_00275 0.31 -0.0 55,392 - gspF OKFHMN_00275 0.31 -0.1 55,414 + gspF OKFHMN_00275 0.33 +0.3 55,414 + gspF OKFHMN_00275 0.33 -0.0 55,415 - gspF OKFHMN_00275 0.33 -0.3 55,415 - gspF OKFHMN_00275 0.33 +1.0 55,506 + gspF OKFHMN_00275 0.40 +1.5 55,506 + gspF OKFHMN_00275 0.40 -0.6 55,506 + gspF OKFHMN_00275 0.40 -1.0 55,507 - gspF OKFHMN_00275 0.40 -1.3 55,509 + gspF OKFHMN_00275 0.40 +1.9 55,509 + gspF OKFHMN_00275 0.40 -0.6 55,548 + gspF OKFHMN_00275 0.44 -0.9 55,549 - gspF OKFHMN_00275 0.44 -0.6 55,604 + gspF OKFHMN_00275 0.48 -0.1 55,604 + gspF OKFHMN_00275 0.48 +1.3 55,608 + gspF OKFHMN_00275 0.49 +0.9 55,629 - gspF OKFHMN_00275 0.50 +0.6 55,667 + gspF OKFHMN_00275 0.53 +1.5 55,668 - gspF OKFHMN_00275 0.53 -1.9 55,668 - gspF OKFHMN_00275 0.53 +1.8 55,717 + gspF OKFHMN_00275 0.57 -1.2 55,768 + gspF OKFHMN_00275 0.62 +0.8 55,768 + gspF OKFHMN_00275 0.62 -1.7 55,768 + gspF OKFHMN_00275 0.62 -0.4 55,923 + gspF OKFHMN_00275 0.74 -0.3 56,126 + -1.8 56,222 - +0.1 56,237 + +1.0 56,306 - -0.5 56,342 + +1.1 56,343 - -1.0 56,368 - +1.3 56,390 + gspE OKFHMN_00280 0.10 +0.1 56,391 - gspE OKFHMN_00280 0.10 +1.5 56,454 - gspE OKFHMN_00280 0.14 +0.6 56,454 - gspE OKFHMN_00280 0.14 +0.4 56,530 + gspE OKFHMN_00280 0.19 +0.7 56,531 - gspE OKFHMN_00280 0.19 -0.1 56,608 + gspE OKFHMN_00280 0.25 -0.0 56,676 + gspE OKFHMN_00280 0.29 -0.5 56,677 - gspE OKFHMN_00280 0.29 -2.9 56,682 + gspE OKFHMN_00280 0.29 +0.2 56,682 + gspE OKFHMN_00280 0.29 +0.5 56,683 - gspE OKFHMN_00280 0.29 +0.6 56,683 - gspE OKFHMN_00280 0.29 +0.9 56,683 - gspE OKFHMN_00280 0.29 -1.4 56,683 - gspE OKFHMN_00280 0.29 +0.2 56,683 - gspE OKFHMN_00280 0.29 -0.8 56,683 - gspE OKFHMN_00280 0.29 +0.8 56,686 + gspE OKFHMN_00280 0.30 +1.1 56,687 - gspE OKFHMN_00280 0.30 +0.6 56,687 - gspE OKFHMN_00280 0.30 +0.9 56,791 + gspE OKFHMN_00280 0.37 -1.0 56,871 - gspE OKFHMN_00280 0.42 +0.6 56,895 + gspE OKFHMN_00280 0.44 +0.1 56,895 + gspE OKFHMN_00280 0.44 -1.8 56,895 + gspE OKFHMN_00280 0.44 -2.1 56,896 - gspE OKFHMN_00280 0.44 +0.9 56,896 - gspE OKFHMN_00280 0.44 +0.5 56,926 + gspE OKFHMN_00280 0.46 -1.0 56,936 + gspE OKFHMN_00280 0.46 +0.5 56,936 + gspE OKFHMN_00280 0.46 +2.0 56,936 + gspE OKFHMN_00280 0.46 +1.2 57,069 + gspE OKFHMN_00280 0.55 +0.4 57,070 - gspE OKFHMN_00280 0.55 +0.2 57,079 + gspE OKFHMN_00280 0.56 +0.0 57,082 + gspE OKFHMN_00280 0.56 +0.6 57,083 - gspE OKFHMN_00280 0.56 -0.3 57,157 - gspE OKFHMN_00280 0.61 +0.1 57,222 + gspE OKFHMN_00280 0.65 +0.1 57,222 + gspE OKFHMN_00280 0.65 -1.5
Or see this region's nucleotide sequence