Strain Fitness in Escherichia coli ECRC62 around BNILDI_21975

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntentS and fepD are separated by 110 nucleotidesfepD and fepG overlap by 4 nucleotidesfepG and fepC overlap by 4 nucleotides BNILDI_21970: entS - enterobactin exporter, iron-regulated, at 4,416,238 to 4,417,488 entS BNILDI_21975: fepD - ferrienterobactin ABC transporter permease, at 4,417,599 to 4,418,603 fepD BNILDI_21980: fepG - iron-enterobactin ABC transporter permease, at 4,418,600 to 4,419,592 fepG BNILDI_21985: fepC - ferrienterobactin ABC transporter ATPase, at 4,419,589 to 4,420,404 fepC Position (kb) 4417 4418 4419Strain fitness (log2 ratio) -3 -2 -1 0 1at 4416.639 kb on + strand, within entSat 4416.640 kb on - strand, within entSat 4416.757 kb on + strand, within entSat 4416.924 kb on + strand, within entSat 4416.928 kb on - strand, within entSat 4416.928 kb on - strand, within entSat 4416.928 kb on - strand, within entSat 4416.985 kb on + strand, within entSat 4417.058 kb on - strand, within entSat 4417.072 kb on + strand, within entSat 4417.145 kb on - strand, within entSat 4417.148 kb on + strand, within entSat 4417.148 kb on + strand, within entSat 4417.149 kb on - strand, within entSat 4417.149 kb on - strand, within entSat 4417.253 kb on + strand, within entSat 4417.254 kb on - strand, within entSat 4417.423 kb on + strandat 4417.424 kb on - strandat 4417.522 kb on + strandat 4417.523 kb on - strandat 4417.542 kb on + strandat 4417.543 kb on - strandat 4417.801 kb on + strand, within fepDat 4418.051 kb on - strand, within fepDat 4418.180 kb on + strand, within fepDat 4418.180 kb on + strand, within fepDat 4418.181 kb on - strand, within fepDat 4418.185 kb on + strand, within fepDat 4418.314 kb on + strand, within fepDat 4418.315 kb on - strand, within fepDat 4418.419 kb on + strand, within fepDat 4418.420 kb on - strand, within fepDat 4418.420 kb on - strand, within fepDat 4418.583 kb on - strandat 4418.749 kb on + strand, within fepGat 4419.082 kb on + strand, within fepGat 4419.082 kb on + strand, within fepGat 4419.199 kb on + strand, within fepGat 4419.499 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,416,639 + entS BNILDI_21970 0.32 +0.4
4,416,640 - entS BNILDI_21970 0.32 +0.1
4,416,757 + entS BNILDI_21970 0.41 -0.9
4,416,924 + entS BNILDI_21970 0.55 +0.2
4,416,928 - entS BNILDI_21970 0.55 -0.9
4,416,928 - entS BNILDI_21970 0.55 -0.5
4,416,928 - entS BNILDI_21970 0.55 -0.1
4,416,985 + entS BNILDI_21970 0.60 -0.2
4,417,058 - entS BNILDI_21970 0.66 -0.4
4,417,072 + entS BNILDI_21970 0.67 -0.8
4,417,145 - entS BNILDI_21970 0.73 +0.2
4,417,148 + entS BNILDI_21970 0.73 +1.0
4,417,148 + entS BNILDI_21970 0.73 +0.8
4,417,149 - entS BNILDI_21970 0.73 +0.6
4,417,149 - entS BNILDI_21970 0.73 +0.6
4,417,253 + entS BNILDI_21970 0.81 -0.5
4,417,254 - entS BNILDI_21970 0.81 -1.1
4,417,423 + +0.3
4,417,424 - +0.2
4,417,522 + -0.7
4,417,523 - -0.1
4,417,542 + -1.0
4,417,543 - -0.0
4,417,801 + fepD BNILDI_21975 0.20 -1.9
4,418,051 - fepD BNILDI_21975 0.45 -0.0
4,418,180 + fepD BNILDI_21975 0.58 -0.9
4,418,180 + fepD BNILDI_21975 0.58 -0.8
4,418,181 - fepD BNILDI_21975 0.58 +0.2
4,418,185 + fepD BNILDI_21975 0.58 +0.3
4,418,314 + fepD BNILDI_21975 0.71 +1.6
4,418,315 - fepD BNILDI_21975 0.71 -0.6
4,418,419 + fepD BNILDI_21975 0.82 -0.5
4,418,420 - fepD BNILDI_21975 0.82 -2.9
4,418,420 - fepD BNILDI_21975 0.82 -0.5
4,418,583 - -0.7
4,418,749 + fepG BNILDI_21980 0.15 -0.2
4,419,082 + fepG BNILDI_21980 0.49 -1.6
4,419,082 + fepG BNILDI_21980 0.49 -1.2
4,419,199 + fepG BNILDI_21980 0.60 -1.3
4,419,499 + -0.6

Or see this region's nucleotide sequence