Strain Fitness in Escherichia coli ECRC62 around BNILDI_21790

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlipA and tatE are separated by 100 nucleotidestatE and tatE are separated by 128 nucleotides BNILDI_21785: lipA - lipoyl synthase, at 4,379,687 to 4,380,652 lipA BNILDI_21790: tatE - deaminated glutathione amidase, at 4,380,753 to 4,380,956 tatE BNILDI_21795: tatE - deaminated glutathione amidase, at 4,381,085 to 4,381,873 tatE Position (kb) 4380 4381Strain fitness (log2 ratio) -2 -1 0 1 2at 4380.646 kb on + strandat 4380.651 kb on - strandat 4380.726 kb on + strandat 4380.726 kb on + strandat 4380.727 kb on - strandat 4380.762 kb on - strandat 4380.879 kb on - strand, within tatEat 4380.891 kb on - strand, within tatEat 4380.924 kb on + strand, within tatEat 4380.925 kb on - strand, within tatEat 4380.941 kb on + strandat 4380.942 kb on - strandat 4380.945 kb on - strandat 4380.945 kb on - strandat 4380.956 kb on + strandat 4380.957 kb on - strandat 4380.960 kb on + strandat 4380.961 kb on - strandat 4380.973 kb on + strandat 4380.974 kb on - strandat 4380.976 kb on - strandat 4381.042 kb on - strandat 4381.091 kb on + strandat 4381.091 kb on + strandat 4381.229 kb on + strand, within tatEat 4381.229 kb on + strand, within tatEat 4381.230 kb on - strand, within tatEat 4381.230 kb on - strand, within tatEat 4381.230 kb on - strand, within tatEat 4381.230 kb on - strand, within tatEat 4381.282 kb on + strand, within tatEat 4381.283 kb on - strand, within tatEat 4381.283 kb on - strand, within tatEat 4381.283 kb on - strand, within tatEat 4381.285 kb on - strand, within tatEat 4381.285 kb on - strand, within tatEat 4381.285 kb on - strand, within tatEat 4381.285 kb on - strand, within tatEat 4381.425 kb on - strand, within tatEat 4381.533 kb on + strand, within tatEat 4381.534 kb on - strand, within tatEat 4381.534 kb on - strand, within tatEat 4381.658 kb on - strand, within tatEat 4381.712 kb on - strand, within tatEat 4381.931 kb on + strandat 4381.932 kb on - strandat 4381.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,380,646 + -0.2
4,380,651 - +1.0
4,380,726 + +2.4
4,380,726 + +0.4
4,380,727 - -2.0
4,380,762 - +0.2
4,380,879 - tatE BNILDI_21790 0.62 +0.2
4,380,891 - tatE BNILDI_21790 0.68 +0.1
4,380,924 + tatE BNILDI_21790 0.84 -1.0
4,380,925 - tatE BNILDI_21790 0.84 +0.1
4,380,941 + +1.1
4,380,942 - -2.2
4,380,945 - +0.2
4,380,945 - +0.2
4,380,956 + -0.4
4,380,957 - -0.6
4,380,960 + +0.5
4,380,961 - -0.1
4,380,973 + +0.4
4,380,974 - +0.6
4,380,976 - -0.6
4,381,042 - -0.1
4,381,091 + +1.2
4,381,091 + +0.3
4,381,229 + tatE BNILDI_21795 0.18 +0.6
4,381,229 + tatE BNILDI_21795 0.18 -0.2
4,381,230 - tatE BNILDI_21795 0.18 -1.5
4,381,230 - tatE BNILDI_21795 0.18 -0.4
4,381,230 - tatE BNILDI_21795 0.18 -0.3
4,381,230 - tatE BNILDI_21795 0.18 +0.3
4,381,282 + tatE BNILDI_21795 0.25 -2.4
4,381,283 - tatE BNILDI_21795 0.25 -1.1
4,381,283 - tatE BNILDI_21795 0.25 +0.2
4,381,283 - tatE BNILDI_21795 0.25 +0.1
4,381,285 - tatE BNILDI_21795 0.25 +0.7
4,381,285 - tatE BNILDI_21795 0.25 -1.1
4,381,285 - tatE BNILDI_21795 0.25 +0.0
4,381,285 - tatE BNILDI_21795 0.25 +0.3
4,381,425 - tatE BNILDI_21795 0.43 +0.6
4,381,533 + tatE BNILDI_21795 0.57 +0.1
4,381,534 - tatE BNILDI_21795 0.57 +0.3
4,381,534 - tatE BNILDI_21795 0.57 -1.8
4,381,658 - tatE BNILDI_21795 0.73 -1.0
4,381,712 - tatE BNILDI_21795 0.79 +0.2
4,381,931 + -1.9
4,381,932 - +0.7
4,381,941 - +0.2

Or see this region's nucleotide sequence