Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lipA and tatE are separated by 100 nucleotides tatE and tatE are separated by 128 nucleotides
BNILDI_21785: lipA - lipoyl synthase, at 4,379,687 to 4,380,652
lipA
BNILDI_21790: tatE - deaminated glutathione amidase, at 4,380,753 to 4,380,956
tatE
BNILDI_21795: tatE - deaminated glutathione amidase, at 4,381,085 to 4,381,873
tatE
Position (kb)
4380
4381 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4380.646 kb on + strand at 4380.651 kb on - strand at 4380.726 kb on + strand at 4380.726 kb on + strand at 4380.727 kb on - strand at 4380.762 kb on - strand at 4380.879 kb on - strand, within tatE at 4380.891 kb on - strand, within tatE at 4380.924 kb on + strand, within tatE at 4380.925 kb on - strand, within tatE at 4380.941 kb on + strand at 4380.942 kb on - strand at 4380.945 kb on - strand at 4380.945 kb on - strand at 4380.956 kb on + strand at 4380.957 kb on - strand at 4380.960 kb on + strand at 4380.961 kb on - strand at 4380.973 kb on + strand at 4380.974 kb on - strand at 4380.976 kb on - strand at 4381.042 kb on - strand at 4381.091 kb on + strand at 4381.091 kb on + strand at 4381.229 kb on + strand, within tatE at 4381.229 kb on + strand, within tatE at 4381.230 kb on - strand, within tatE at 4381.230 kb on - strand, within tatE at 4381.230 kb on - strand, within tatE at 4381.230 kb on - strand, within tatE at 4381.282 kb on + strand, within tatE at 4381.283 kb on - strand, within tatE at 4381.283 kb on - strand, within tatE at 4381.283 kb on - strand, within tatE at 4381.285 kb on - strand, within tatE at 4381.285 kb on - strand, within tatE at 4381.285 kb on - strand, within tatE at 4381.285 kb on - strand, within tatE at 4381.425 kb on - strand, within tatE at 4381.533 kb on + strand, within tatE at 4381.534 kb on - strand, within tatE at 4381.534 kb on - strand, within tatE at 4381.658 kb on - strand, within tatE at 4381.712 kb on - strand, within tatE at 4381.931 kb on + strand at 4381.932 kb on - strand at 4381.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,380,646 + -0.2 4,380,651 - +1.0 4,380,726 + +2.4 4,380,726 + +0.4 4,380,727 - -2.0 4,380,762 - +0.2 4,380,879 - tatE BNILDI_21790 0.62 +0.2 4,380,891 - tatE BNILDI_21790 0.68 +0.1 4,380,924 + tatE BNILDI_21790 0.84 -1.0 4,380,925 - tatE BNILDI_21790 0.84 +0.1 4,380,941 + +1.1 4,380,942 - -2.2 4,380,945 - +0.2 4,380,945 - +0.2 4,380,956 + -0.4 4,380,957 - -0.6 4,380,960 + +0.5 4,380,961 - -0.1 4,380,973 + +0.4 4,380,974 - +0.6 4,380,976 - -0.6 4,381,042 - -0.1 4,381,091 + +1.2 4,381,091 + +0.3 4,381,229 + tatE BNILDI_21795 0.18 +0.6 4,381,229 + tatE BNILDI_21795 0.18 -0.2 4,381,230 - tatE BNILDI_21795 0.18 -1.5 4,381,230 - tatE BNILDI_21795 0.18 -0.4 4,381,230 - tatE BNILDI_21795 0.18 -0.3 4,381,230 - tatE BNILDI_21795 0.18 +0.3 4,381,282 + tatE BNILDI_21795 0.25 -2.4 4,381,283 - tatE BNILDI_21795 0.25 -1.1 4,381,283 - tatE BNILDI_21795 0.25 +0.2 4,381,283 - tatE BNILDI_21795 0.25 +0.1 4,381,285 - tatE BNILDI_21795 0.25 +0.7 4,381,285 - tatE BNILDI_21795 0.25 -1.1 4,381,285 - tatE BNILDI_21795 0.25 +0.0 4,381,285 - tatE BNILDI_21795 0.25 +0.3 4,381,425 - tatE BNILDI_21795 0.43 +0.6 4,381,533 + tatE BNILDI_21795 0.57 +0.1 4,381,534 - tatE BNILDI_21795 0.57 +0.3 4,381,534 - tatE BNILDI_21795 0.57 -1.8 4,381,658 - tatE BNILDI_21795 0.73 -1.0 4,381,712 - tatE BNILDI_21795 0.79 +0.2 4,381,931 + -1.9 4,381,932 - +0.7 4,381,941 - +0.2
Or see this region's nucleotide sequence