Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lnt and BNILDI_21635 are separated by 77 nucleotides BNILDI_21635 and BNILDI_21640 are separated by 93 nucleotides
BNILDI_21630: lnt - apolipoprotein N-acyltransferase, at 4,348,208 to 4,349,746
lnt
BNILDI_21635: BNILDI_21635 - Peptidase S54, at 4,349,824 to 4,350,804
_21635
BNILDI_21640: BNILDI_21640 - Rhomboid family protein, at 4,350,898 to 4,351,701
_21640
Position (kb)
4349
4350
4351 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4349.737 kb on + strand at 4349.738 kb on - strand at 4349.758 kb on + strand at 4349.778 kb on + strand at 4349.839 kb on - strand at 4349.871 kb on + strand at 4349.871 kb on + strand at 4349.872 kb on - strand at 4350.035 kb on + strand, within BNILDI_21635 at 4350.035 kb on + strand, within BNILDI_21635 at 4350.035 kb on + strand, within BNILDI_21635 at 4350.036 kb on - strand, within BNILDI_21635 at 4350.050 kb on + strand, within BNILDI_21635 at 4350.064 kb on + strand, within BNILDI_21635 at 4350.064 kb on + strand, within BNILDI_21635 at 4350.065 kb on - strand, within BNILDI_21635 at 4350.087 kb on + strand, within BNILDI_21635 at 4350.101 kb on + strand, within BNILDI_21635 at 4350.129 kb on + strand, within BNILDI_21635 at 4350.129 kb on + strand, within BNILDI_21635 at 4350.129 kb on + strand, within BNILDI_21635 at 4350.130 kb on - strand, within BNILDI_21635 at 4350.130 kb on - strand, within BNILDI_21635 at 4350.157 kb on + strand, within BNILDI_21635 at 4350.157 kb on + strand, within BNILDI_21635 at 4350.157 kb on + strand, within BNILDI_21635 at 4350.157 kb on + strand, within BNILDI_21635 at 4350.158 kb on - strand, within BNILDI_21635 at 4350.160 kb on - strand, within BNILDI_21635 at 4350.160 kb on - strand, within BNILDI_21635 at 4350.298 kb on - strand, within BNILDI_21635 at 4350.392 kb on + strand, within BNILDI_21635 at 4350.393 kb on - strand, within BNILDI_21635 at 4350.393 kb on - strand, within BNILDI_21635 at 4350.425 kb on + strand, within BNILDI_21635 at 4350.426 kb on - strand, within BNILDI_21635 at 4350.426 kb on - strand, within BNILDI_21635 at 4350.453 kb on + strand, within BNILDI_21635 at 4350.453 kb on + strand, within BNILDI_21635 at 4350.454 kb on - strand, within BNILDI_21635 at 4350.454 kb on - strand, within BNILDI_21635 at 4350.457 kb on - strand, within BNILDI_21635 at 4350.626 kb on - strand, within BNILDI_21635 at 4350.654 kb on + strand, within BNILDI_21635 at 4350.708 kb on + strand at 4350.709 kb on - strand at 4350.773 kb on + strand at 4350.774 kb on - strand at 4350.774 kb on - strand at 4350.780 kb on + strand at 4350.780 kb on + strand at 4350.781 kb on - strand at 4350.781 kb on - strand at 4350.783 kb on + strand at 4350.783 kb on + strand at 4350.784 kb on - strand at 4350.983 kb on - strand, within BNILDI_21640 at 4351.054 kb on - strand, within BNILDI_21640 at 4351.054 kb on - strand, within BNILDI_21640 at 4351.156 kb on + strand, within BNILDI_21640 at 4351.156 kb on + strand, within BNILDI_21640 at 4351.156 kb on + strand, within BNILDI_21640 at 4351.156 kb on + strand, within BNILDI_21640 at 4351.157 kb on - strand, within BNILDI_21640 at 4351.157 kb on - strand, within BNILDI_21640 at 4351.157 kb on - strand, within BNILDI_21640 at 4351.179 kb on - strand, within BNILDI_21640 at 4351.285 kb on + strand, within BNILDI_21640 at 4351.293 kb on + strand, within BNILDI_21640 at 4351.461 kb on + strand, within BNILDI_21640 at 4351.462 kb on - strand, within BNILDI_21640 at 4351.510 kb on + strand, within BNILDI_21640 at 4351.551 kb on + strand, within BNILDI_21640 at 4351.592 kb on + strand, within BNILDI_21640 at 4351.654 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,349,737 + +0.4 4,349,738 - +0.2 4,349,758 + +0.2 4,349,778 + +0.3 4,349,839 - -0.1 4,349,871 + +0.3 4,349,871 + -0.3 4,349,872 - -0.0 4,350,035 + BNILDI_21635 0.22 -1.2 4,350,035 + BNILDI_21635 0.22 -1.7 4,350,035 + BNILDI_21635 0.22 -0.7 4,350,036 - BNILDI_21635 0.22 +0.2 4,350,050 + BNILDI_21635 0.23 +1.0 4,350,064 + BNILDI_21635 0.24 +0.7 4,350,064 + BNILDI_21635 0.24 +0.6 4,350,065 - BNILDI_21635 0.25 +0.8 4,350,087 + BNILDI_21635 0.27 +0.3 4,350,101 + BNILDI_21635 0.28 +0.9 4,350,129 + BNILDI_21635 0.31 +0.3 4,350,129 + BNILDI_21635 0.31 +0.7 4,350,129 + BNILDI_21635 0.31 +0.9 4,350,130 - BNILDI_21635 0.31 -0.1 4,350,130 - BNILDI_21635 0.31 -0.0 4,350,157 + BNILDI_21635 0.34 +0.2 4,350,157 + BNILDI_21635 0.34 +0.8 4,350,157 + BNILDI_21635 0.34 +0.1 4,350,157 + BNILDI_21635 0.34 -0.3 4,350,158 - BNILDI_21635 0.34 -0.7 4,350,160 - BNILDI_21635 0.34 -0.2 4,350,160 - BNILDI_21635 0.34 -0.7 4,350,298 - BNILDI_21635 0.48 -0.2 4,350,392 + BNILDI_21635 0.58 -0.1 4,350,393 - BNILDI_21635 0.58 +0.5 4,350,393 - BNILDI_21635 0.58 -0.9 4,350,425 + BNILDI_21635 0.61 +0.5 4,350,426 - BNILDI_21635 0.61 -0.6 4,350,426 - BNILDI_21635 0.61 +0.4 4,350,453 + BNILDI_21635 0.64 +0.3 4,350,453 + BNILDI_21635 0.64 +0.5 4,350,454 - BNILDI_21635 0.64 -0.3 4,350,454 - BNILDI_21635 0.64 -1.4 4,350,457 - BNILDI_21635 0.65 -0.1 4,350,626 - BNILDI_21635 0.82 +0.3 4,350,654 + BNILDI_21635 0.85 +0.2 4,350,708 + +1.2 4,350,709 - -1.0 4,350,773 + +0.1 4,350,774 - +0.8 4,350,774 - +0.2 4,350,780 + -0.2 4,350,780 + -1.0 4,350,781 - +0.1 4,350,781 - -1.1 4,350,783 + -1.2 4,350,783 + +0.0 4,350,784 - -0.1 4,350,983 - BNILDI_21640 0.11 -0.9 4,351,054 - BNILDI_21640 0.19 +0.5 4,351,054 - BNILDI_21640 0.19 +0.5 4,351,156 + BNILDI_21640 0.32 -1.2 4,351,156 + BNILDI_21640 0.32 -0.2 4,351,156 + BNILDI_21640 0.32 +0.0 4,351,156 + BNILDI_21640 0.32 +0.4 4,351,157 - BNILDI_21640 0.32 -0.0 4,351,157 - BNILDI_21640 0.32 -0.2 4,351,157 - BNILDI_21640 0.32 -0.1 4,351,179 - BNILDI_21640 0.35 -0.5 4,351,285 + BNILDI_21640 0.48 -4.1 4,351,293 + BNILDI_21640 0.49 +0.9 4,351,461 + BNILDI_21640 0.70 -0.0 4,351,462 - BNILDI_21640 0.70 +0.4 4,351,510 + BNILDI_21640 0.76 +0.5 4,351,551 + BNILDI_21640 0.81 -0.3 4,351,592 + BNILDI_21640 0.86 +1.5 4,351,654 + -1.1
Or see this region's nucleotide sequence