Strain Fitness in Escherichia coli ECRC62 around BNILDI_21635

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlnt and BNILDI_21635 are separated by 77 nucleotidesBNILDI_21635 and BNILDI_21640 are separated by 93 nucleotides BNILDI_21630: lnt - apolipoprotein N-acyltransferase, at 4,348,208 to 4,349,746 lnt BNILDI_21635: BNILDI_21635 - Peptidase S54, at 4,349,824 to 4,350,804 _21635 BNILDI_21640: BNILDI_21640 - Rhomboid family protein, at 4,350,898 to 4,351,701 _21640 Position (kb) 4349 4350 4351Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4349.737 kb on + strandat 4349.738 kb on - strandat 4349.758 kb on + strandat 4349.778 kb on + strandat 4349.839 kb on - strandat 4349.871 kb on + strandat 4349.871 kb on + strandat 4349.872 kb on - strandat 4350.035 kb on + strand, within BNILDI_21635at 4350.035 kb on + strand, within BNILDI_21635at 4350.035 kb on + strand, within BNILDI_21635at 4350.036 kb on - strand, within BNILDI_21635at 4350.050 kb on + strand, within BNILDI_21635at 4350.064 kb on + strand, within BNILDI_21635at 4350.064 kb on + strand, within BNILDI_21635at 4350.065 kb on - strand, within BNILDI_21635at 4350.087 kb on + strand, within BNILDI_21635at 4350.101 kb on + strand, within BNILDI_21635at 4350.129 kb on + strand, within BNILDI_21635at 4350.129 kb on + strand, within BNILDI_21635at 4350.129 kb on + strand, within BNILDI_21635at 4350.130 kb on - strand, within BNILDI_21635at 4350.130 kb on - strand, within BNILDI_21635at 4350.157 kb on + strand, within BNILDI_21635at 4350.157 kb on + strand, within BNILDI_21635at 4350.157 kb on + strand, within BNILDI_21635at 4350.157 kb on + strand, within BNILDI_21635at 4350.158 kb on - strand, within BNILDI_21635at 4350.160 kb on - strand, within BNILDI_21635at 4350.160 kb on - strand, within BNILDI_21635at 4350.298 kb on - strand, within BNILDI_21635at 4350.392 kb on + strand, within BNILDI_21635at 4350.393 kb on - strand, within BNILDI_21635at 4350.393 kb on - strand, within BNILDI_21635at 4350.425 kb on + strand, within BNILDI_21635at 4350.426 kb on - strand, within BNILDI_21635at 4350.426 kb on - strand, within BNILDI_21635at 4350.453 kb on + strand, within BNILDI_21635at 4350.453 kb on + strand, within BNILDI_21635at 4350.454 kb on - strand, within BNILDI_21635at 4350.454 kb on - strand, within BNILDI_21635at 4350.457 kb on - strand, within BNILDI_21635at 4350.626 kb on - strand, within BNILDI_21635at 4350.654 kb on + strand, within BNILDI_21635at 4350.708 kb on + strandat 4350.709 kb on - strandat 4350.773 kb on + strandat 4350.774 kb on - strandat 4350.774 kb on - strandat 4350.780 kb on + strandat 4350.780 kb on + strandat 4350.781 kb on - strandat 4350.781 kb on - strandat 4350.783 kb on + strandat 4350.783 kb on + strandat 4350.784 kb on - strandat 4350.983 kb on - strand, within BNILDI_21640at 4351.054 kb on - strand, within BNILDI_21640at 4351.054 kb on - strand, within BNILDI_21640at 4351.156 kb on + strand, within BNILDI_21640at 4351.156 kb on + strand, within BNILDI_21640at 4351.156 kb on + strand, within BNILDI_21640at 4351.156 kb on + strand, within BNILDI_21640at 4351.157 kb on - strand, within BNILDI_21640at 4351.157 kb on - strand, within BNILDI_21640at 4351.157 kb on - strand, within BNILDI_21640at 4351.179 kb on - strand, within BNILDI_21640at 4351.285 kb on + strand, within BNILDI_21640at 4351.293 kb on + strand, within BNILDI_21640at 4351.461 kb on + strand, within BNILDI_21640at 4351.462 kb on - strand, within BNILDI_21640at 4351.510 kb on + strand, within BNILDI_21640at 4351.551 kb on + strand, within BNILDI_21640at 4351.592 kb on + strand, within BNILDI_21640at 4351.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,349,737 + +0.4
4,349,738 - +0.2
4,349,758 + +0.2
4,349,778 + +0.3
4,349,839 - -0.1
4,349,871 + +0.3
4,349,871 + -0.3
4,349,872 - -0.0
4,350,035 + BNILDI_21635 0.22 -1.2
4,350,035 + BNILDI_21635 0.22 -1.7
4,350,035 + BNILDI_21635 0.22 -0.7
4,350,036 - BNILDI_21635 0.22 +0.2
4,350,050 + BNILDI_21635 0.23 +1.0
4,350,064 + BNILDI_21635 0.24 +0.7
4,350,064 + BNILDI_21635 0.24 +0.6
4,350,065 - BNILDI_21635 0.25 +0.8
4,350,087 + BNILDI_21635 0.27 +0.3
4,350,101 + BNILDI_21635 0.28 +0.9
4,350,129 + BNILDI_21635 0.31 +0.3
4,350,129 + BNILDI_21635 0.31 +0.7
4,350,129 + BNILDI_21635 0.31 +0.9
4,350,130 - BNILDI_21635 0.31 -0.1
4,350,130 - BNILDI_21635 0.31 -0.0
4,350,157 + BNILDI_21635 0.34 +0.2
4,350,157 + BNILDI_21635 0.34 +0.8
4,350,157 + BNILDI_21635 0.34 +0.1
4,350,157 + BNILDI_21635 0.34 -0.3
4,350,158 - BNILDI_21635 0.34 -0.7
4,350,160 - BNILDI_21635 0.34 -0.2
4,350,160 - BNILDI_21635 0.34 -0.7
4,350,298 - BNILDI_21635 0.48 -0.2
4,350,392 + BNILDI_21635 0.58 -0.1
4,350,393 - BNILDI_21635 0.58 +0.5
4,350,393 - BNILDI_21635 0.58 -0.9
4,350,425 + BNILDI_21635 0.61 +0.5
4,350,426 - BNILDI_21635 0.61 -0.6
4,350,426 - BNILDI_21635 0.61 +0.4
4,350,453 + BNILDI_21635 0.64 +0.3
4,350,453 + BNILDI_21635 0.64 +0.5
4,350,454 - BNILDI_21635 0.64 -0.3
4,350,454 - BNILDI_21635 0.64 -1.4
4,350,457 - BNILDI_21635 0.65 -0.1
4,350,626 - BNILDI_21635 0.82 +0.3
4,350,654 + BNILDI_21635 0.85 +0.2
4,350,708 + +1.2
4,350,709 - -1.0
4,350,773 + +0.1
4,350,774 - +0.8
4,350,774 - +0.2
4,350,780 + -0.2
4,350,780 + -1.0
4,350,781 - +0.1
4,350,781 - -1.1
4,350,783 + -1.2
4,350,783 + +0.0
4,350,784 - -0.1
4,350,983 - BNILDI_21640 0.11 -0.9
4,351,054 - BNILDI_21640 0.19 +0.5
4,351,054 - BNILDI_21640 0.19 +0.5
4,351,156 + BNILDI_21640 0.32 -1.2
4,351,156 + BNILDI_21640 0.32 -0.2
4,351,156 + BNILDI_21640 0.32 +0.0
4,351,156 + BNILDI_21640 0.32 +0.4
4,351,157 - BNILDI_21640 0.32 -0.0
4,351,157 - BNILDI_21640 0.32 -0.2
4,351,157 - BNILDI_21640 0.32 -0.1
4,351,179 - BNILDI_21640 0.35 -0.5
4,351,285 + BNILDI_21640 0.48 -4.1
4,351,293 + BNILDI_21640 0.49 +0.9
4,351,461 + BNILDI_21640 0.70 -0.0
4,351,462 - BNILDI_21640 0.70 +0.4
4,351,510 + BNILDI_21640 0.76 +0.5
4,351,551 + BNILDI_21640 0.81 -0.3
4,351,592 + BNILDI_21640 0.86 +1.5
4,351,654 + -1.1

Or see this region's nucleotide sequence