Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glnS and BNILDI_21535 are separated by 110 nucleotides BNILDI_21535 and nagE overlap by 31 nucleotides
BNILDI_21530: glnS - glutamine--tRNA ligase, at 4,331,471 to 4,333,135
glnS
BNILDI_21535: BNILDI_21535 - hypothetical protein, at 4,333,246 to 4,333,368
_21535
BNILDI_21540: nagE - PTS N-acetyl glucosamine transporter subunit IIABC, at 4,333,338 to 4,335,284
nagE
Position (kb)
4333
4334 Strain fitness (log2 ratio)
-1
0
1 at 4333.182 kb on - strand at 4333.229 kb on + strand at 4333.230 kb on - strand at 4333.230 kb on - strand at 4333.240 kb on - strand at 4333.330 kb on - strand, within BNILDI_21535 at 4333.339 kb on + strand at 4333.339 kb on + strand at 4333.394 kb on + strand at 4333.395 kb on - strand at 4333.472 kb on - strand at 4333.510 kb on - strand at 4333.578 kb on - strand, within nagE at 4333.827 kb on + strand, within nagE at 4333.828 kb on - strand, within nagE at 4333.947 kb on - strand, within nagE at 4333.947 kb on - strand, within nagE at 4333.968 kb on + strand, within nagE at 4333.992 kb on - strand, within nagE at 4334.096 kb on + strand, within nagE at 4334.096 kb on + strand, within nagE at 4334.096 kb on + strand, within nagE at 4334.097 kb on - strand, within nagE at 4334.097 kb on - strand, within nagE at 4334.097 kb on - strand, within nagE at 4334.098 kb on + strand, within nagE at 4334.098 kb on + strand, within nagE at 4334.098 kb on + strand, within nagE at 4334.099 kb on - strand, within nagE at 4334.099 kb on - strand, within nagE at 4334.171 kb on + strand, within nagE at 4334.302 kb on + strand, within nagE at 4334.302 kb on + strand, within nagE at 4334.303 kb on - strand, within nagE at 4334.303 kb on - strand, within nagE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,333,182 - +0.6 4,333,229 + +0.2 4,333,230 - -0.2 4,333,230 - -0.1 4,333,240 - -0.4 4,333,330 - BNILDI_21535 0.68 -1.2 4,333,339 + -0.2 4,333,339 + -0.7 4,333,394 + -0.4 4,333,395 - -0.6 4,333,472 - +0.3 4,333,510 - +0.4 4,333,578 - nagE BNILDI_21540 0.12 -0.6 4,333,827 + nagE BNILDI_21540 0.25 +0.7 4,333,828 - nagE BNILDI_21540 0.25 -0.3 4,333,947 - nagE BNILDI_21540 0.31 -0.1 4,333,947 - nagE BNILDI_21540 0.31 +0.2 4,333,968 + nagE BNILDI_21540 0.32 +0.5 4,333,992 - nagE BNILDI_21540 0.34 -0.2 4,334,096 + nagE BNILDI_21540 0.39 -0.8 4,334,096 + nagE BNILDI_21540 0.39 -0.0 4,334,096 + nagE BNILDI_21540 0.39 +0.2 4,334,097 - nagE BNILDI_21540 0.39 -0.2 4,334,097 - nagE BNILDI_21540 0.39 -1.2 4,334,097 - nagE BNILDI_21540 0.39 +0.1 4,334,098 + nagE BNILDI_21540 0.39 -0.2 4,334,098 + nagE BNILDI_21540 0.39 +1.3 4,334,098 + nagE BNILDI_21540 0.39 -0.8 4,334,099 - nagE BNILDI_21540 0.39 -1.6 4,334,099 - nagE BNILDI_21540 0.39 +0.6 4,334,171 + nagE BNILDI_21540 0.43 +0.0 4,334,302 + nagE BNILDI_21540 0.50 +0.6 4,334,302 + nagE BNILDI_21540 0.50 +0.4 4,334,303 - nagE BNILDI_21540 0.50 -0.6 4,334,303 - nagE BNILDI_21540 0.50 -0.1
Or see this region's nucleotide sequence