Strain Fitness in Escherichia coli ECRC62 around BNILDI_21535

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglnS and BNILDI_21535 are separated by 110 nucleotidesBNILDI_21535 and nagE overlap by 31 nucleotides BNILDI_21530: glnS - glutamine--tRNA ligase, at 4,331,471 to 4,333,135 glnS BNILDI_21535: BNILDI_21535 - hypothetical protein, at 4,333,246 to 4,333,368 _21535 BNILDI_21540: nagE - PTS N-acetyl glucosamine transporter subunit IIABC, at 4,333,338 to 4,335,284 nagE Position (kb) 4333 4334Strain fitness (log2 ratio) -1 0 1at 4333.182 kb on - strandat 4333.229 kb on + strandat 4333.230 kb on - strandat 4333.230 kb on - strandat 4333.240 kb on - strandat 4333.330 kb on - strand, within BNILDI_21535at 4333.339 kb on + strandat 4333.339 kb on + strandat 4333.394 kb on + strandat 4333.395 kb on - strandat 4333.472 kb on - strandat 4333.510 kb on - strandat 4333.578 kb on - strand, within nagEat 4333.827 kb on + strand, within nagEat 4333.828 kb on - strand, within nagEat 4333.947 kb on - strand, within nagEat 4333.947 kb on - strand, within nagEat 4333.968 kb on + strand, within nagEat 4333.992 kb on - strand, within nagEat 4334.096 kb on + strand, within nagEat 4334.096 kb on + strand, within nagEat 4334.096 kb on + strand, within nagEat 4334.097 kb on - strand, within nagEat 4334.097 kb on - strand, within nagEat 4334.097 kb on - strand, within nagEat 4334.098 kb on + strand, within nagEat 4334.098 kb on + strand, within nagEat 4334.098 kb on + strand, within nagEat 4334.099 kb on - strand, within nagEat 4334.099 kb on - strand, within nagEat 4334.171 kb on + strand, within nagEat 4334.302 kb on + strand, within nagEat 4334.302 kb on + strand, within nagEat 4334.303 kb on - strand, within nagEat 4334.303 kb on - strand, within nagE

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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4,333,182 - +0.6
4,333,229 + +0.2
4,333,230 - -0.2
4,333,230 - -0.1
4,333,240 - -0.4
4,333,330 - BNILDI_21535 0.68 -1.2
4,333,339 + -0.2
4,333,339 + -0.7
4,333,394 + -0.4
4,333,395 - -0.6
4,333,472 - +0.3
4,333,510 - +0.4
4,333,578 - nagE BNILDI_21540 0.12 -0.6
4,333,827 + nagE BNILDI_21540 0.25 +0.7
4,333,828 - nagE BNILDI_21540 0.25 -0.3
4,333,947 - nagE BNILDI_21540 0.31 -0.1
4,333,947 - nagE BNILDI_21540 0.31 +0.2
4,333,968 + nagE BNILDI_21540 0.32 +0.5
4,333,992 - nagE BNILDI_21540 0.34 -0.2
4,334,096 + nagE BNILDI_21540 0.39 -0.8
4,334,096 + nagE BNILDI_21540 0.39 -0.0
4,334,096 + nagE BNILDI_21540 0.39 +0.2
4,334,097 - nagE BNILDI_21540 0.39 -0.2
4,334,097 - nagE BNILDI_21540 0.39 -1.2
4,334,097 - nagE BNILDI_21540 0.39 +0.1
4,334,098 + nagE BNILDI_21540 0.39 -0.2
4,334,098 + nagE BNILDI_21540 0.39 +1.3
4,334,098 + nagE BNILDI_21540 0.39 -0.8
4,334,099 - nagE BNILDI_21540 0.39 -1.6
4,334,099 - nagE BNILDI_21540 0.39 +0.6
4,334,171 + nagE BNILDI_21540 0.43 +0.0
4,334,302 + nagE BNILDI_21540 0.50 +0.6
4,334,302 + nagE BNILDI_21540 0.50 +0.4
4,334,303 - nagE BNILDI_21540 0.50 -0.6
4,334,303 - nagE BNILDI_21540 0.50 -0.1

Or see this region's nucleotide sequence