Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_20130 and insB are separated by 128 nucleotides insB and BNILDI_20140 are separated by 109 nucleotides BNILDI_20140 and ssuE are separated by 355 nucleotides ssuE and ssuA overlap by 8 nucleotides
BNILDI_20130: BNILDI_20130 - HTH-Tnp-IS1 domain-containing protein, at 4,042,509 to 4,042,568
_20130
BNILDI_20135: insB - Transposase and inactivated derivatives, IS1 family, at 4,042,697 to 4,042,990
insB
BNILDI_20140: BNILDI_20140 - fimbrial protein, at 4,043,100 to 4,043,642
_20140
BNILDI_20145: ssuE - NADPH-dependent FMN reductase, at 4,043,998 to 4,044,573
ssuE
BNILDI_20150: ssuA - aliphatic sulfonate ABC transporter substrate-binding protein SsuA, at 4,044,566 to 4,045,525
ssuA
Position (kb) 4043
4044 Strain fitness (log2 ratio) -1
0
1
2
3 at 4042.241 kb on - strand at 4042.268 kb on - strand at 4043.022 kb on - strand at 4043.038 kb on + strand at 4043.062 kb on - strand at 4043.506 kb on - strand, within BNILDI_20140 at 4043.528 kb on + strand, within BNILDI_20140 at 4043.534 kb on + strand, within BNILDI_20140 at 4043.535 kb on - strand, within BNILDI_20140 at 4043.614 kb on - strand at 4043.615 kb on + strand at 4043.987 kb on - strand at 4043.998 kb on - strand at 4044.061 kb on + strand, within ssuE at 4044.226 kb on + strand, within ssuE at 4044.226 kb on + strand, within ssuE at 4044.428 kb on + strand, within ssuE at 4044.429 kb on - strand, within ssuE at 4044.571 kb on + strand at 4044.572 kb on - strand at 4044.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 4,042,241 - -0.5 4,042,268 - -0.3 4,043,022 - -0.1 4,043,038 + -0.7 4,043,062 - +0.1 4,043,506 - BNILDI_20140 0.75 -1.7 4,043,528 + BNILDI_20140 0.79 +0.8 4,043,534 + BNILDI_20140 0.80 -0.5 4,043,535 - BNILDI_20140 0.80 +0.6 4,043,614 - -0.1 4,043,615 + +0.1 4,043,987 - +3.0 4,043,998 - +0.1 4,044,061 + ssuE BNILDI_20145 0.11 -0.2 4,044,226 + ssuE BNILDI_20145 0.40 -0.1 4,044,226 + ssuE BNILDI_20145 0.40 -0.4 4,044,428 + ssuE BNILDI_20145 0.75 +0.1 4,044,429 - ssuE BNILDI_20145 0.75 -1.0 4,044,571 + +0.3 4,044,572 - +0.3 4,044,581 - +0.3
Or see this region's nucleotide sequence