Strain Fitness in Escherichia coli ECRC62 around BNILDI_16505

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiF and aroD are separated by 145 nucleotidesaroD and ydiB are separated by 30 nucleotidesydiB and uhpC are separated by 11 nucleotides BNILDI_16500: ydiF - Acetate CoA-transferase YdiF, at 3,304,344 to 3,305,939 ydiF BNILDI_16505: aroD - 3-dehydroquinate dehydratase, at 3,306,085 to 3,306,843 aroD BNILDI_16510: ydiB - quinate/shikimate dehydrogenase, at 3,306,874 to 3,307,740 ydiB BNILDI_16515: uhpC - MFS transporter, at 3,307,752 to 3,309,017 uhpC Position (kb) 3306 3307Strain fitness (log2 ratio) -3 -2 -1 0 1at 3305.106 kb on - strand, within ydiFat 3305.135 kb on + strand, within ydiFat 3305.423 kb on - strand, within ydiFat 3305.451 kb on - strand, within ydiFat 3305.534 kb on + strand, within ydiFat 3305.664 kb on + strand, within ydiFat 3305.665 kb on - strand, within ydiFat 3305.756 kb on + strand, within ydiFat 3306.214 kb on + strand, within aroDat 3306.511 kb on - strand, within aroDat 3306.511 kb on - strand, within aroDat 3306.552 kb on + strand, within aroDat 3306.553 kb on - strand, within aroDat 3306.554 kb on + strand, within aroDat 3306.901 kb on - strandat 3307.030 kb on - strand, within ydiBat 3307.040 kb on + strand, within ydiBat 3307.498 kb on + strand, within ydiBat 3307.511 kb on + strand, within ydiBat 3307.545 kb on + strand, within ydiBat 3307.630 kb on - strand, within ydiBat 3307.630 kb on - strand, within ydiBat 3307.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,305,106 - ydiF BNILDI_16500 0.48 -0.6
3,305,135 + ydiF BNILDI_16500 0.50 +1.2
3,305,423 - ydiF BNILDI_16500 0.68 +0.6
3,305,451 - ydiF BNILDI_16500 0.69 +0.2
3,305,534 + ydiF BNILDI_16500 0.75 +0.3
3,305,664 + ydiF BNILDI_16500 0.83 +0.5
3,305,665 - ydiF BNILDI_16500 0.83 -0.5
3,305,756 + ydiF BNILDI_16500 0.88 -0.3
3,306,214 + aroD BNILDI_16505 0.17 -3.6
3,306,511 - aroD BNILDI_16505 0.56 -2.7
3,306,511 - aroD BNILDI_16505 0.56 -3.1
3,306,552 + aroD BNILDI_16505 0.62 -3.3
3,306,553 - aroD BNILDI_16505 0.62 -2.1
3,306,554 + aroD BNILDI_16505 0.62 -3.5
3,306,901 - +0.9
3,307,030 - ydiB BNILDI_16510 0.18 +0.4
3,307,040 + ydiB BNILDI_16510 0.19 +0.3
3,307,498 + ydiB BNILDI_16510 0.72 -0.2
3,307,511 + ydiB BNILDI_16510 0.73 -2.0
3,307,545 + ydiB BNILDI_16510 0.77 -0.6
3,307,630 - ydiB BNILDI_16510 0.87 -0.0
3,307,630 - ydiB BNILDI_16510 0.87 -0.1
3,307,693 - -0.4

Or see this region's nucleotide sequence