Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgcP and yoaF are separated by 182 nucleotides yoaF and BNILDI_15980 overlap by 47 nucleotides BNILDI_15980 and yeaO are separated by 2 nucleotides yeaO and nimT are separated by 54 nucleotides
BNILDI_15970: dgcP - diguanylate cyclase DgcP, at 3,203,273 to 3,204,298
dgcP
BNILDI_15975: yoaF - DUF333 domain-containing protein, at 3,204,481 to 3,204,735
yoaF
BNILDI_15980: BNILDI_15980 - Transposase, at 3,204,689 to 3,204,754
_15980
BNILDI_15985: yeaO - Uncharacterized protein YeaO, at 3,204,757 to 3,205,104
yeaO
BNILDI_15990: nimT - 2-nitroimidazole transporter, at 3,205,159 to 3,206,340
nimT
Position (kb) 3204
3205
3206 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3203.839 kb on + strand, within dgcP at 3203.865 kb on - strand, within dgcP at 3203.871 kb on - strand, within dgcP at 3203.935 kb on - strand, within dgcP at 3204.139 kb on + strand, within dgcP at 3204.139 kb on + strand, within dgcP at 3204.139 kb on + strand, within dgcP at 3204.140 kb on - strand, within dgcP at 3204.140 kb on - strand, within dgcP at 3204.140 kb on - strand, within dgcP at 3204.140 kb on - strand, within dgcP at 3204.357 kb on - strand at 3204.458 kb on - strand at 3204.558 kb on + strand, within yoaF at 3204.766 kb on - strand at 3204.821 kb on + strand, within yeaO at 3204.902 kb on + strand, within yeaO at 3205.145 kb on + strand at 3205.146 kb on - strand at 3205.147 kb on + strand at 3205.240 kb on + strand at 3205.659 kb on - strand, within nimT at 3205.735 kb on + strand, within nimT at 3205.735 kb on + strand, within nimT at 3205.919 kb on + strand, within nimT at 3205.919 kb on + strand, within nimT at 3205.920 kb on - strand, within nimT at 3205.991 kb on - strand, within nimT at 3206.019 kb on + strand, within nimT at 3206.029 kb on + strand, within nimT at 3206.032 kb on + strand, within nimT at 3206.033 kb on - strand, within nimT at 3206.033 kb on - strand, within nimT at 3206.033 kb on - strand, within nimT at 3206.036 kb on + strand, within nimT at 3206.037 kb on - strand, within nimT at 3206.037 kb on - strand, within nimT at 3206.083 kb on + strand, within nimT
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,203,839 + dgcP BNILDI_15970 0.55 -0.6 3,203,865 - dgcP BNILDI_15970 0.58 +0.8 3,203,871 - dgcP BNILDI_15970 0.58 -0.1 3,203,935 - dgcP BNILDI_15970 0.65 -0.0 3,204,139 + dgcP BNILDI_15970 0.84 +0.0 3,204,139 + dgcP BNILDI_15970 0.84 +0.6 3,204,139 + dgcP BNILDI_15970 0.84 -0.1 3,204,140 - dgcP BNILDI_15970 0.85 -0.2 3,204,140 - dgcP BNILDI_15970 0.85 +0.6 3,204,140 - dgcP BNILDI_15970 0.85 +0.2 3,204,140 - dgcP BNILDI_15970 0.85 +0.7 3,204,357 - +0.5 3,204,458 - -0.9 3,204,558 + yoaF BNILDI_15975 0.30 +0.2 3,204,766 - +0.3 3,204,821 + yeaO BNILDI_15985 0.18 +0.2 3,204,902 + yeaO BNILDI_15985 0.42 +1.0 3,205,145 + -0.9 3,205,146 - +0.1 3,205,147 + +0.5 3,205,240 + +0.5 3,205,659 - nimT BNILDI_15990 0.42 -1.2 3,205,735 + nimT BNILDI_15990 0.49 +0.4 3,205,735 + nimT BNILDI_15990 0.49 +2.5 3,205,919 + nimT BNILDI_15990 0.64 -0.3 3,205,919 + nimT BNILDI_15990 0.64 +0.3 3,205,920 - nimT BNILDI_15990 0.64 -0.8 3,205,991 - nimT BNILDI_15990 0.70 -0.8 3,206,019 + nimT BNILDI_15990 0.73 -2.0 3,206,029 + nimT BNILDI_15990 0.74 -0.1 3,206,032 + nimT BNILDI_15990 0.74 +0.0 3,206,033 - nimT BNILDI_15990 0.74 +0.1 3,206,033 - nimT BNILDI_15990 0.74 -0.1 3,206,033 - nimT BNILDI_15990 0.74 -0.2 3,206,036 + nimT BNILDI_15990 0.74 -0.2 3,206,037 - nimT BNILDI_15990 0.74 +1.0 3,206,037 - nimT BNILDI_15990 0.74 -0.8 3,206,083 + nimT BNILDI_15990 0.78 -0.6
Or see this region's nucleotide sequence