Strain Fitness in Escherichia coli ECRC62 around BNILDI_15890

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyoaA and tsaB are separated by 21 nucleotidestsaB and yeaY are separated by 39 nucleotidesyeaY and fadD are separated by 138 nucleotides BNILDI_15885: yoaA - putative ATP-dependent DNA helicase YoaA, at 3,186,805 to 3,188,715 yoaA BNILDI_15890: tsaB - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 3,188,737 to 3,189,468 tsaB BNILDI_15895: yeaY - Slp family lipoprotein YeaY, at 3,189,508 to 3,190,089 yeaY BNILDI_15900: fadD - long-chain-fatty-acid--CoA ligase FadD, at 3,190,228 to 3,191,979 fadD Position (kb) 3188 3189 3190Strain fitness (log2 ratio) -1 0 1at 3188.208 kb on + strand, within yoaAat 3188.218 kb on - strand, within yoaAat 3188.453 kb on + strand, within yoaAat 3188.454 kb on - strand, within yoaAat 3188.713 kb on + strandat 3188.729 kb on - strandat 3189.473 kb on + strandat 3189.473 kb on + strandat 3189.540 kb on - strandat 3189.549 kb on + strandat 3189.549 kb on + strandat 3189.550 kb on - strandat 3189.658 kb on + strand, within yeaYat 3189.659 kb on - strand, within yeaYat 3189.953 kb on + strand, within yeaYat 3189.969 kb on + strand, within yeaYat 3190.374 kb on + strandat 3190.374 kb on + strandat 3190.375 kb on - strandat 3190.375 kb on - strandat 3190.437 kb on - strand, within fadD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
3,188,208 + yoaA BNILDI_15885 0.73 +0.2
3,188,218 - yoaA BNILDI_15885 0.74 -0.2
3,188,453 + yoaA BNILDI_15885 0.86 -0.0
3,188,454 - yoaA BNILDI_15885 0.86 -0.6
3,188,713 + +0.9
3,188,729 - -0.9
3,189,473 + +0.9
3,189,473 + +0.5
3,189,540 - -0.6
3,189,549 + -0.5
3,189,549 + -0.5
3,189,550 - -0.1
3,189,658 + yeaY BNILDI_15895 0.26 +0.9
3,189,659 - yeaY BNILDI_15895 0.26 +0.0
3,189,953 + yeaY BNILDI_15895 0.76 +0.4
3,189,969 + yeaY BNILDI_15895 0.79 +0.2
3,190,374 + -0.4
3,190,374 + -1.5
3,190,375 - -0.9
3,190,375 - +1.1
3,190,437 - fadD BNILDI_15900 0.12 -1.3

Or see this region's nucleotide sequence