Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kdgR and yobH are separated by 142 nucleotides yobH and yebO are separated by 376 nucleotides yebO and cspE are separated by 825 nucleotides
BNILDI_15785: kdgR - DNA-binding transcriptional regulator KdgR, at 3,169,941 to 3,170,732
kdgR
BNILDI_15790: yobH - Uncharacterized protein YobH, at 3,170,875 to 3,171,114
yobH
BNILDI_15795: yebO - Uncharacterized protein YebO, at 3,171,491 to 3,171,778
yebO
BNILDI_15800: cspE - transcription antiterminator/RNA stability regulator CspE, at 3,172,604 to 3,172,813
cspE
Position (kb)
3171
3172 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3170.661 kb on + strand at 3170.661 kb on + strand at 3170.828 kb on + strand at 3170.828 kb on + strand at 3170.836 kb on + strand at 3170.904 kb on + strand, within yobH at 3170.905 kb on - strand, within yobH at 3170.909 kb on - strand, within yobH at 3170.958 kb on - strand, within yobH at 3170.958 kb on - strand, within yobH at 3170.958 kb on - strand, within yobH at 3170.991 kb on - strand, within yobH at 3170.991 kb on - strand, within yobH at 3170.994 kb on + strand, within yobH at 3170.995 kb on - strand, within yobH at 3171.008 kb on - strand, within yobH at 3171.008 kb on - strand, within yobH at 3171.062 kb on - strand, within yobH at 3171.115 kb on + strand at 3171.115 kb on + strand at 3171.133 kb on + strand at 3171.206 kb on + strand at 3171.207 kb on - strand at 3171.207 kb on - strand at 3171.235 kb on + strand at 3171.248 kb on + strand at 3171.417 kb on + strand at 3171.504 kb on + strand at 3171.541 kb on - strand, within yebO at 3171.669 kb on + strand, within yebO at 3171.751 kb on + strand at 3171.838 kb on - strand at 3172.234 kb on - strand at 3172.239 kb on - strand at 3172.293 kb on + strand at 3172.318 kb on - strand at 3172.404 kb on + strand at 3172.520 kb on + strand at 3172.522 kb on + strand at 3172.541 kb on - strand at 3172.558 kb on + strand at 3172.559 kb on - strand at 3172.696 kb on - strand, within cspE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,170,661 + -0.2 3,170,661 + -0.2 3,170,828 + -0.5 3,170,828 + -1.3 3,170,836 + -1.7 3,170,904 + yobH BNILDI_15790 0.12 +0.7 3,170,905 - yobH BNILDI_15790 0.12 -0.0 3,170,909 - yobH BNILDI_15790 0.14 -0.3 3,170,958 - yobH BNILDI_15790 0.35 -0.8 3,170,958 - yobH BNILDI_15790 0.35 +0.2 3,170,958 - yobH BNILDI_15790 0.35 +1.3 3,170,991 - yobH BNILDI_15790 0.48 -1.2 3,170,991 - yobH BNILDI_15790 0.48 -0.0 3,170,994 + yobH BNILDI_15790 0.50 -0.7 3,170,995 - yobH BNILDI_15790 0.50 +0.2 3,171,008 - yobH BNILDI_15790 0.55 +0.7 3,171,008 - yobH BNILDI_15790 0.55 +0.7 3,171,062 - yobH BNILDI_15790 0.78 -0.2 3,171,115 + -0.5 3,171,115 + +0.3 3,171,133 + -0.2 3,171,206 + -0.7 3,171,207 - +0.2 3,171,207 - +0.3 3,171,235 + +0.1 3,171,248 + +2.1 3,171,417 + +0.6 3,171,504 + +0.4 3,171,541 - yebO BNILDI_15795 0.17 -2.6 3,171,669 + yebO BNILDI_15795 0.62 -0.8 3,171,751 + +0.0 3,171,838 - +0.2 3,172,234 - +0.5 3,172,239 - -0.2 3,172,293 + -1.6 3,172,318 - +0.5 3,172,404 + +0.3 3,172,520 + -1.1 3,172,522 + -0.2 3,172,541 - -0.7 3,172,558 + -0.7 3,172,559 - -0.8 3,172,696 - cspE BNILDI_15800 0.44 -0.3
Or see this region's nucleotide sequence