Strain Fitness in Escherichia coli ECRC62 around BNILDI_15795

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntkdgR and yobH are separated by 142 nucleotidesyobH and yebO are separated by 376 nucleotidesyebO and cspE are separated by 825 nucleotides BNILDI_15785: kdgR - DNA-binding transcriptional regulator KdgR, at 3,169,941 to 3,170,732 kdgR BNILDI_15790: yobH - Uncharacterized protein YobH, at 3,170,875 to 3,171,114 yobH BNILDI_15795: yebO - Uncharacterized protein YebO, at 3,171,491 to 3,171,778 yebO BNILDI_15800: cspE - transcription antiterminator/RNA stability regulator CspE, at 3,172,604 to 3,172,813 cspE Position (kb) 3171 3172Strain fitness (log2 ratio) -2 -1 0 1 2at 3170.661 kb on + strandat 3170.661 kb on + strandat 3170.828 kb on + strandat 3170.828 kb on + strandat 3170.836 kb on + strandat 3170.904 kb on + strand, within yobHat 3170.905 kb on - strand, within yobHat 3170.909 kb on - strand, within yobHat 3170.958 kb on - strand, within yobHat 3170.958 kb on - strand, within yobHat 3170.958 kb on - strand, within yobHat 3170.991 kb on - strand, within yobHat 3170.991 kb on - strand, within yobHat 3170.994 kb on + strand, within yobHat 3170.995 kb on - strand, within yobHat 3171.008 kb on - strand, within yobHat 3171.008 kb on - strand, within yobHat 3171.062 kb on - strand, within yobHat 3171.115 kb on + strandat 3171.115 kb on + strandat 3171.133 kb on + strandat 3171.206 kb on + strandat 3171.207 kb on - strandat 3171.207 kb on - strandat 3171.235 kb on + strandat 3171.248 kb on + strandat 3171.417 kb on + strandat 3171.504 kb on + strandat 3171.541 kb on - strand, within yebOat 3171.669 kb on + strand, within yebOat 3171.751 kb on + strandat 3171.838 kb on - strandat 3172.234 kb on - strandat 3172.239 kb on - strandat 3172.293 kb on + strandat 3172.318 kb on - strandat 3172.404 kb on + strandat 3172.520 kb on + strandat 3172.522 kb on + strandat 3172.541 kb on - strandat 3172.558 kb on + strandat 3172.559 kb on - strandat 3172.696 kb on - strand, within cspE

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,170,661 + -0.2
3,170,661 + -0.2
3,170,828 + -0.5
3,170,828 + -1.3
3,170,836 + -1.7
3,170,904 + yobH BNILDI_15790 0.12 +0.7
3,170,905 - yobH BNILDI_15790 0.12 -0.0
3,170,909 - yobH BNILDI_15790 0.14 -0.3
3,170,958 - yobH BNILDI_15790 0.35 -0.8
3,170,958 - yobH BNILDI_15790 0.35 +0.2
3,170,958 - yobH BNILDI_15790 0.35 +1.3
3,170,991 - yobH BNILDI_15790 0.48 -1.2
3,170,991 - yobH BNILDI_15790 0.48 -0.0
3,170,994 + yobH BNILDI_15790 0.50 -0.7
3,170,995 - yobH BNILDI_15790 0.50 +0.2
3,171,008 - yobH BNILDI_15790 0.55 +0.7
3,171,008 - yobH BNILDI_15790 0.55 +0.7
3,171,062 - yobH BNILDI_15790 0.78 -0.2
3,171,115 + -0.5
3,171,115 + +0.3
3,171,133 + -0.2
3,171,206 + -0.7
3,171,207 - +0.2
3,171,207 - +0.3
3,171,235 + +0.1
3,171,248 + +2.1
3,171,417 + +0.6
3,171,504 + +0.4
3,171,541 - yebO BNILDI_15795 0.17 -2.6
3,171,669 + yebO BNILDI_15795 0.62 -0.8
3,171,751 + +0.0
3,171,838 - +0.2
3,172,234 - +0.5
3,172,239 - -0.2
3,172,293 + -1.6
3,172,318 - +0.5
3,172,404 + +0.3
3,172,520 + -1.1
3,172,522 + -0.2
3,172,541 - -0.7
3,172,558 + -0.7
3,172,559 - -0.8
3,172,696 - cspE BNILDI_15800 0.44 -0.3

Or see this region's nucleotide sequence