Strain Fitness in Escherichia coli ECRC62 around BNILDI_15555

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_15550 and BNILDI_15555 are separated by 36 nucleotidesBNILDI_15555 and BNILDI_15560 are separated by 88 nucleotides BNILDI_15550: BNILDI_15550 - alpha-mannosidase, at 3,122,732 to 3,125,806 _15550 BNILDI_15555: BNILDI_15555 - glycosyl hydrolase, at 3,125,843 to 3,127,711 _15555 BNILDI_15560: BNILDI_15560 - TrmB family transcriptional regulator, at 3,127,800 to 3,128,609 _15560 Position (kb) 3125 3126 3127 3128Strain fitness (log2 ratio) -1 0 1at 3125.147 kb on + strand, within BNILDI_15550at 3125.789 kb on - strandat 3126.953 kb on - strand, within BNILDI_15555at 3127.199 kb on - strand, within BNILDI_15555at 3127.589 kb on + strandat 3128.404 kb on + strand, within BNILDI_15560at 3128.435 kb on + strand, within BNILDI_15560at 3128.523 kb on - strand, within BNILDI_15560at 3128.523 kb on - strand, within BNILDI_15560at 3128.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,125,147 + BNILDI_15550 0.79 -0.1
3,125,789 - +1.2
3,126,953 - BNILDI_15555 0.59 +0.4
3,127,199 - BNILDI_15555 0.73 -1.4
3,127,589 + +0.7
3,128,404 + BNILDI_15560 0.75 +0.6
3,128,435 + BNILDI_15560 0.78 -1.6
3,128,523 - BNILDI_15560 0.89 -0.9
3,128,523 - BNILDI_15560 0.89 +1.0
3,128,609 + +0.2

Or see this region's nucleotide sequence