Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_15505 and yobI are separated by 70 nucleotides yobI and ruvA are separated by 138 nucleotides ruvA and ruvB are separated by 8 nucleotides ruvB and znuB are separated by 146 nucleotides znuB and znuC overlap by 4 nucleotides
BNILDI_15505: BNILDI_15505 - YebB family permuted papain-like enzyme, at 3,115,012 to 3,115,614
_15505
BNILDI_15510: yobI - Uncharacterized protein YobI, at 3,115,685 to 3,115,750
yobI
BNILDI_15515: ruvA - Holliday junction branch migration protein RuvA, at 3,115,889 to 3,116,500
ruvA
BNILDI_15520: ruvB - Holliday junction branch migration DNA helicase RuvB, at 3,116,509 to 3,117,519
ruvB
BNILDI_15525: znuB - zinc ABC transporter permease subunit ZnuB, at 3,117,666 to 3,118,451
znuB
BNILDI_15530: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 3,118,448 to 3,119,203
znuC
Position (kb)
3116
3117
3118 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3115.560 kb on + strand at 3115.560 kb on + strand at 3115.560 kb on + strand at 3115.606 kb on - strand at 3115.859 kb on + strand at 3115.859 kb on + strand at 3115.941 kb on + strand at 3116.077 kb on + strand, within ruvA at 3116.561 kb on + strand at 3116.887 kb on + strand, within ruvB at 3117.081 kb on + strand, within ruvB at 3117.614 kb on + strand at 3117.667 kb on + strand at 3117.668 kb on - strand at 3117.668 kb on - strand at 3117.668 kb on - strand at 3117.718 kb on - strand at 3117.879 kb on - strand, within znuB at 3118.034 kb on + strand, within znuB at 3118.137 kb on - strand, within znuB at 3118.279 kb on + strand, within znuB at 3118.324 kb on - strand, within znuB at 3118.344 kb on - strand, within znuB at 3118.355 kb on - strand, within znuB at 3118.441 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 3,115,560 + -0.0 3,115,560 + +2.5 3,115,560 + +0.1 3,115,606 - -0.4 3,115,859 + +1.4 3,115,859 + +0.9 3,115,941 + -3.1 3,116,077 + ruvA BNILDI_15515 0.31 -2.1 3,116,561 + +1.2 3,116,887 + ruvB BNILDI_15520 0.37 -1.9 3,117,081 + ruvB BNILDI_15520 0.57 -3.1 3,117,614 + +1.0 3,117,667 + -1.6 3,117,668 - -0.3 3,117,668 - -2.1 3,117,668 - -1.7 3,117,718 - +0.2 3,117,879 - znuB BNILDI_15525 0.27 -0.4 3,118,034 + znuB BNILDI_15525 0.47 +0.7 3,118,137 - znuB BNILDI_15525 0.60 -0.5 3,118,279 + znuB BNILDI_15525 0.78 +2.1 3,118,324 - znuB BNILDI_15525 0.84 -1.1 3,118,344 - znuB BNILDI_15525 0.86 -0.6 3,118,355 - znuB BNILDI_15525 0.88 -1.2 3,118,441 - -0.1
Or see this region's nucleotide sequence