Strain Fitness in Escherichia coli ECRC62 around BNILDI_15520

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_15505 and yobI are separated by 70 nucleotidesyobI and ruvA are separated by 138 nucleotidesruvA and ruvB are separated by 8 nucleotidesruvB and znuB are separated by 146 nucleotidesznuB and znuC overlap by 4 nucleotides BNILDI_15505: BNILDI_15505 - YebB family permuted papain-like enzyme, at 3,115,012 to 3,115,614 _15505 BNILDI_15510: yobI - Uncharacterized protein YobI, at 3,115,685 to 3,115,750 yobI BNILDI_15515: ruvA - Holliday junction branch migration protein RuvA, at 3,115,889 to 3,116,500 ruvA BNILDI_15520: ruvB - Holliday junction branch migration DNA helicase RuvB, at 3,116,509 to 3,117,519 ruvB BNILDI_15525: znuB - zinc ABC transporter permease subunit ZnuB, at 3,117,666 to 3,118,451 znuB BNILDI_15530: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 3,118,448 to 3,119,203 znuC Position (kb) 3116 3117 3118Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3115.560 kb on + strandat 3115.560 kb on + strandat 3115.560 kb on + strandat 3115.606 kb on - strandat 3115.859 kb on + strandat 3115.859 kb on + strandat 3115.941 kb on + strandat 3116.077 kb on + strand, within ruvAat 3116.561 kb on + strandat 3116.887 kb on + strand, within ruvBat 3117.081 kb on + strand, within ruvBat 3117.614 kb on + strandat 3117.667 kb on + strandat 3117.668 kb on - strandat 3117.668 kb on - strandat 3117.668 kb on - strandat 3117.718 kb on - strandat 3117.879 kb on - strand, within znuBat 3118.034 kb on + strand, within znuBat 3118.137 kb on - strand, within znuBat 3118.279 kb on + strand, within znuBat 3118.324 kb on - strand, within znuBat 3118.344 kb on - strand, within znuBat 3118.355 kb on - strand, within znuBat 3118.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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3,115,560 + -0.0
3,115,560 + +2.5
3,115,560 + +0.1
3,115,606 - -0.4
3,115,859 + +1.4
3,115,859 + +0.9
3,115,941 + -3.1
3,116,077 + ruvA BNILDI_15515 0.31 -2.1
3,116,561 + +1.2
3,116,887 + ruvB BNILDI_15520 0.37 -1.9
3,117,081 + ruvB BNILDI_15520 0.57 -3.1
3,117,614 + +1.0
3,117,667 + -1.6
3,117,668 - -0.3
3,117,668 - -2.1
3,117,668 - -1.7
3,117,718 - +0.2
3,117,879 - znuB BNILDI_15525 0.27 -0.4
3,118,034 + znuB BNILDI_15525 0.47 +0.7
3,118,137 - znuB BNILDI_15525 0.60 -0.5
3,118,279 + znuB BNILDI_15525 0.78 +2.1
3,118,324 - znuB BNILDI_15525 0.84 -1.1
3,118,344 - znuB BNILDI_15525 0.86 -0.6
3,118,355 - znuB BNILDI_15525 0.88 -1.2
3,118,441 - -0.1

Or see this region's nucleotide sequence