Strain Fitness in Escherichia coli ECRC62 around BNILDI_14960

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmtfA and Ser_trna are separated by 93 nucleotidesSer_trna and yodB are separated by 569 nucleotidesyodB and zinT are separated by 342 nucleotides BNILDI_14950: mtfA - DgsA anti-repressor MtfA, at 3,020,254 to 3,021,051 mtfA BNILDI_14955: Ser_trna - tRNA-Ser(cga), at 3,021,145 to 3,021,234 _trna BNILDI_14960: yodB - Cytochrome b561-like protein, at 3,021,804 to 3,022,334 yodB BNILDI_14965: zinT - metal-binding protein ZinT, at 3,022,677 to 3,023,327 zinT Position (kb) 3021 3022 3023Strain fitness (log2 ratio) -1 0 1 2at 3020.815 kb on + strand, within mtfAat 3020.815 kb on + strand, within mtfAat 3020.968 kb on + strand, within mtfAat 3021.045 kb on + strandat 3021.046 kb on - strandat 3021.293 kb on + strandat 3021.692 kb on - strandat 3021.755 kb on + strandat 3021.756 kb on - strandat 3021.839 kb on + strandat 3021.853 kb on + strandat 3021.906 kb on - strand, within yodBat 3022.013 kb on - strand, within yodBat 3022.057 kb on - strand, within yodBat 3022.058 kb on + strand, within yodBat 3022.059 kb on - strand, within yodBat 3022.061 kb on - strand, within yodBat 3022.061 kb on - strand, within yodBat 3022.121 kb on + strand, within yodBat 3022.219 kb on + strand, within yodBat 3022.267 kb on + strand, within yodBat 3022.446 kb on + strandat 3022.459 kb on + strandat 3022.541 kb on + strandat 3022.552 kb on + strandat 3022.586 kb on - strandat 3022.644 kb on + strandat 3022.675 kb on - strandat 3022.923 kb on + strand, within zinTat 3023.124 kb on + strand, within zinTat 3023.229 kb on + strand, within zinTat 3023.283 kb on - strandat 3023.292 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
3,020,815 + mtfA BNILDI_14950 0.70 -0.6
3,020,815 + mtfA BNILDI_14950 0.70 +2.4
3,020,968 + mtfA BNILDI_14950 0.89 +0.4
3,021,045 + -0.1
3,021,046 - -1.1
3,021,293 + +0.5
3,021,692 - +0.5
3,021,755 + -0.3
3,021,756 - -0.2
3,021,839 + -0.1
3,021,853 + +0.0
3,021,906 - yodB BNILDI_14960 0.19 -0.1
3,022,013 - yodB BNILDI_14960 0.39 +1.5
3,022,057 - yodB BNILDI_14960 0.48 -1.4
3,022,058 + yodB BNILDI_14960 0.48 -0.0
3,022,059 - yodB BNILDI_14960 0.48 -1.6
3,022,061 - yodB BNILDI_14960 0.48 -0.3
3,022,061 - yodB BNILDI_14960 0.48 -0.1
3,022,121 + yodB BNILDI_14960 0.60 +0.3
3,022,219 + yodB BNILDI_14960 0.78 +0.2
3,022,267 + yodB BNILDI_14960 0.87 -0.2
3,022,446 + -0.5
3,022,459 + +0.7
3,022,541 + +0.2
3,022,552 + +0.2
3,022,586 - +0.2
3,022,644 + -1.0
3,022,675 - -0.1
3,022,923 + zinT BNILDI_14965 0.38 +0.3
3,023,124 + zinT BNILDI_14965 0.69 +0.1
3,023,229 + zinT BNILDI_14965 0.85 +0.2
3,023,283 - +0.2
3,023,292 + -0.1

Or see this region's nucleotide sequence