Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_14320 and BNILDI_14325 are separated by 6 nucleotides BNILDI_14325 and BNILDI_14330 overlap by 4 nucleotides BNILDI_14330 and yegX are separated by 64 nucleotides yegX and yegW are separated by 51 nucleotides
BNILDI_14320: BNILDI_14320 - Hydroxyethylthiazole kinase, at 2,891,113 to 2,891,499
_14320
BNILDI_14325: BNILDI_14325 - Hydroxyethylthiazole kinase, at 2,891,506 to 2,891,901
_14325
BNILDI_14330: BNILDI_14330 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,891,898 to 2,892,698
_14330
BNILDI_14335: yegX - Uncharacterized protein YegX, at 2,892,763 to 2,893,581
yegX
BNILDI_14340: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 2,893,633 to 2,894,379
yegW
Position (kb)
2891
2892
2893 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2891.024 kb on - strand at 2891.030 kb on - strand at 2891.113 kb on - strand at 2891.113 kb on - strand at 2891.113 kb on - strand at 2891.113 kb on - strand at 2891.221 kb on - strand, within BNILDI_14320 at 2891.320 kb on - strand, within BNILDI_14320 at 2891.638 kb on + strand, within BNILDI_14325 at 2891.638 kb on + strand, within BNILDI_14325 at 2891.638 kb on + strand, within BNILDI_14325 at 2891.761 kb on - strand, within BNILDI_14325 at 2892.009 kb on - strand, within BNILDI_14330 at 2892.134 kb on + strand, within BNILDI_14330 at 2892.219 kb on - strand, within BNILDI_14330 at 2892.266 kb on + strand, within BNILDI_14330 at 2892.595 kb on + strand, within BNILDI_14330 at 2892.705 kb on + strand at 2892.706 kb on - strand at 2892.708 kb on + strand at 2892.708 kb on + strand at 2892.708 kb on + strand at 2892.708 kb on + strand at 2892.709 kb on - strand at 2892.777 kb on + strand at 2892.806 kb on + strand at 2892.895 kb on + strand, within yegX at 2892.895 kb on + strand, within yegX at 2892.907 kb on + strand, within yegX at 2892.907 kb on + strand, within yegX at 2892.971 kb on + strand, within yegX at 2892.972 kb on - strand, within yegX at 2893.044 kb on - strand, within yegX at 2893.104 kb on + strand, within yegX at 2893.115 kb on + strand, within yegX at 2893.147 kb on + strand, within yegX at 2893.194 kb on - strand, within yegX at 2893.292 kb on + strand, within yegX at 2893.417 kb on + strand, within yegX at 2893.417 kb on + strand, within yegX at 2893.487 kb on + strand, within yegX at 2893.487 kb on + strand, within yegX at 2893.488 kb on - strand, within yegX at 2893.515 kb on + strand at 2893.520 kb on + strand at 2893.520 kb on + strand at 2893.521 kb on - strand at 2893.596 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,891,024 - -0.7 2,891,030 - -0.4 2,891,113 - -1.3 2,891,113 - -2.5 2,891,113 - +0.6 2,891,113 - +0.5 2,891,221 - BNILDI_14320 0.28 -1.3 2,891,320 - BNILDI_14320 0.53 +0.5 2,891,638 + BNILDI_14325 0.33 -1.9 2,891,638 + BNILDI_14325 0.33 +1.8 2,891,638 + BNILDI_14325 0.33 +0.3 2,891,761 - BNILDI_14325 0.64 -0.2 2,892,009 - BNILDI_14330 0.14 -0.6 2,892,134 + BNILDI_14330 0.29 -1.5 2,892,219 - BNILDI_14330 0.40 -0.3 2,892,266 + BNILDI_14330 0.46 -1.9 2,892,595 + BNILDI_14330 0.87 -0.8 2,892,705 + -3.2 2,892,706 - +1.0 2,892,708 + +0.1 2,892,708 + +0.7 2,892,708 + -0.4 2,892,708 + +0.3 2,892,709 - +0.4 2,892,777 + +0.0 2,892,806 + +0.4 2,892,895 + yegX BNILDI_14335 0.16 +0.1 2,892,895 + yegX BNILDI_14335 0.16 -0.3 2,892,907 + yegX BNILDI_14335 0.18 +0.6 2,892,907 + yegX BNILDI_14335 0.18 -0.7 2,892,971 + yegX BNILDI_14335 0.25 +0.4 2,892,972 - yegX BNILDI_14335 0.26 +0.3 2,893,044 - yegX BNILDI_14335 0.34 +0.3 2,893,104 + yegX BNILDI_14335 0.42 -0.4 2,893,115 + yegX BNILDI_14335 0.43 -0.6 2,893,147 + yegX BNILDI_14335 0.47 -0.5 2,893,194 - yegX BNILDI_14335 0.53 -0.7 2,893,292 + yegX BNILDI_14335 0.65 -1.2 2,893,417 + yegX BNILDI_14335 0.80 +2.1 2,893,417 + yegX BNILDI_14335 0.80 +1.7 2,893,487 + yegX BNILDI_14335 0.88 -0.8 2,893,487 + yegX BNILDI_14335 0.88 +1.0 2,893,488 - yegX BNILDI_14335 0.89 -0.6 2,893,515 + +0.2 2,893,520 + +1.0 2,893,520 + +0.0 2,893,521 - -0.3 2,893,596 + -0.6
Or see this region's nucleotide sequence