Strain Fitness in Escherichia coli ECRC62 around BNILDI_14330

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_14320 and BNILDI_14325 are separated by 6 nucleotidesBNILDI_14325 and BNILDI_14330 overlap by 4 nucleotidesBNILDI_14330 and yegX are separated by 64 nucleotidesyegX and yegW are separated by 51 nucleotides BNILDI_14320: BNILDI_14320 - Hydroxyethylthiazole kinase, at 2,891,113 to 2,891,499 _14320 BNILDI_14325: BNILDI_14325 - Hydroxyethylthiazole kinase, at 2,891,506 to 2,891,901 _14325 BNILDI_14330: BNILDI_14330 - bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase, at 2,891,898 to 2,892,698 _14330 BNILDI_14335: yegX - Uncharacterized protein YegX, at 2,892,763 to 2,893,581 yegX BNILDI_14340: yegW - Uncharacterized HTH-type transcriptional regulator YegW, at 2,893,633 to 2,894,379 yegW Position (kb) 2891 2892 2893Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2891.024 kb on - strandat 2891.030 kb on - strandat 2891.113 kb on - strandat 2891.113 kb on - strandat 2891.113 kb on - strandat 2891.113 kb on - strandat 2891.221 kb on - strand, within BNILDI_14320at 2891.320 kb on - strand, within BNILDI_14320at 2891.638 kb on + strand, within BNILDI_14325at 2891.638 kb on + strand, within BNILDI_14325at 2891.638 kb on + strand, within BNILDI_14325at 2891.761 kb on - strand, within BNILDI_14325at 2892.009 kb on - strand, within BNILDI_14330at 2892.134 kb on + strand, within BNILDI_14330at 2892.219 kb on - strand, within BNILDI_14330at 2892.266 kb on + strand, within BNILDI_14330at 2892.595 kb on + strand, within BNILDI_14330at 2892.705 kb on + strandat 2892.706 kb on - strandat 2892.708 kb on + strandat 2892.708 kb on + strandat 2892.708 kb on + strandat 2892.708 kb on + strandat 2892.709 kb on - strandat 2892.777 kb on + strandat 2892.806 kb on + strandat 2892.895 kb on + strand, within yegXat 2892.895 kb on + strand, within yegXat 2892.907 kb on + strand, within yegXat 2892.907 kb on + strand, within yegXat 2892.971 kb on + strand, within yegXat 2892.972 kb on - strand, within yegXat 2893.044 kb on - strand, within yegXat 2893.104 kb on + strand, within yegXat 2893.115 kb on + strand, within yegXat 2893.147 kb on + strand, within yegXat 2893.194 kb on - strand, within yegXat 2893.292 kb on + strand, within yegXat 2893.417 kb on + strand, within yegXat 2893.417 kb on + strand, within yegXat 2893.487 kb on + strand, within yegXat 2893.487 kb on + strand, within yegXat 2893.488 kb on - strand, within yegXat 2893.515 kb on + strandat 2893.520 kb on + strandat 2893.520 kb on + strandat 2893.521 kb on - strandat 2893.596 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,891,024 - -0.7
2,891,030 - -0.4
2,891,113 - -1.3
2,891,113 - -2.5
2,891,113 - +0.6
2,891,113 - +0.5
2,891,221 - BNILDI_14320 0.28 -1.3
2,891,320 - BNILDI_14320 0.53 +0.5
2,891,638 + BNILDI_14325 0.33 -1.9
2,891,638 + BNILDI_14325 0.33 +1.8
2,891,638 + BNILDI_14325 0.33 +0.3
2,891,761 - BNILDI_14325 0.64 -0.2
2,892,009 - BNILDI_14330 0.14 -0.6
2,892,134 + BNILDI_14330 0.29 -1.5
2,892,219 - BNILDI_14330 0.40 -0.3
2,892,266 + BNILDI_14330 0.46 -1.9
2,892,595 + BNILDI_14330 0.87 -0.8
2,892,705 + -3.2
2,892,706 - +1.0
2,892,708 + +0.1
2,892,708 + +0.7
2,892,708 + -0.4
2,892,708 + +0.3
2,892,709 - +0.4
2,892,777 + +0.0
2,892,806 + +0.4
2,892,895 + yegX BNILDI_14335 0.16 +0.1
2,892,895 + yegX BNILDI_14335 0.16 -0.3
2,892,907 + yegX BNILDI_14335 0.18 +0.6
2,892,907 + yegX BNILDI_14335 0.18 -0.7
2,892,971 + yegX BNILDI_14335 0.25 +0.4
2,892,972 - yegX BNILDI_14335 0.26 +0.3
2,893,044 - yegX BNILDI_14335 0.34 +0.3
2,893,104 + yegX BNILDI_14335 0.42 -0.4
2,893,115 + yegX BNILDI_14335 0.43 -0.6
2,893,147 + yegX BNILDI_14335 0.47 -0.5
2,893,194 - yegX BNILDI_14335 0.53 -0.7
2,893,292 + yegX BNILDI_14335 0.65 -1.2
2,893,417 + yegX BNILDI_14335 0.80 +2.1
2,893,417 + yegX BNILDI_14335 0.80 +1.7
2,893,487 + yegX BNILDI_14335 0.88 -0.8
2,893,487 + yegX BNILDI_14335 0.88 +1.0
2,893,488 - yegX BNILDI_14335 0.89 -0.6
2,893,515 + +0.2
2,893,520 + +1.0
2,893,520 + +0.0
2,893,521 - -0.3
2,893,596 + -0.6

Or see this region's nucleotide sequence