Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt apbC and yehE are separated by 262 nucleotides yehE and yehD are separated by 292 nucleotides yehD and yehC are separated by 80 nucleotides
BNILDI_14260: apbC - iron-sulfur cluster carrier protein ApbC, at 2,879,218 to 2,880,327
apbC
BNILDI_14265: yehE - Uncharacterized protein YehE, at 2,880,590 to 2,880,871
yehE
BNILDI_14270: yehD - Uncharacterized fimbrial-like protein YehD, at 2,881,164 to 2,881,706
yehD
BNILDI_14275: yehC - putative fimbrial chaperone YehC, at 2,881,787 to 2,882,461
yehC
Position (kb)
2880
2881 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2879.656 kb on + strand, within apbC at 2879.737 kb on - strand, within apbC at 2880.060 kb on + strand, within apbC at 2880.061 kb on - strand, within apbC at 2880.069 kb on + strand, within apbC at 2880.173 kb on + strand, within apbC at 2880.173 kb on + strand, within apbC at 2880.332 kb on + strand at 2880.357 kb on + strand at 2880.388 kb on + strand at 2880.391 kb on + strand at 2880.392 kb on - strand at 2880.433 kb on + strand at 2880.434 kb on - strand at 2880.461 kb on - strand at 2880.478 kb on + strand at 2880.495 kb on + strand at 2880.516 kb on - strand at 2880.524 kb on + strand at 2880.531 kb on - strand at 2880.532 kb on + strand at 2880.533 kb on - strand at 2880.533 kb on - strand at 2880.533 kb on - strand at 2880.541 kb on - strand at 2880.553 kb on + strand at 2880.571 kb on - strand at 2880.599 kb on + strand at 2880.599 kb on + strand at 2880.600 kb on - strand at 2880.680 kb on - strand, within yehE at 2880.715 kb on + strand, within yehE at 2880.758 kb on + strand, within yehE at 2880.758 kb on + strand, within yehE at 2880.758 kb on + strand, within yehE at 2880.758 kb on + strand, within yehE at 2880.759 kb on - strand, within yehE at 2880.759 kb on - strand, within yehE at 2880.759 kb on - strand, within yehE at 2880.888 kb on + strand at 2880.919 kb on - strand at 2880.920 kb on + strand at 2880.921 kb on - strand at 2880.921 kb on - strand at 2880.921 kb on - strand at 2880.972 kb on - strand at 2880.976 kb on + strand at 2881.416 kb on - strand, within yehD at 2881.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,879,656 + apbC BNILDI_14260 0.39 +0.4 2,879,737 - apbC BNILDI_14260 0.47 -0.0 2,880,060 + apbC BNILDI_14260 0.76 -1.4 2,880,061 - apbC BNILDI_14260 0.76 +0.9 2,880,069 + apbC BNILDI_14260 0.77 -0.6 2,880,173 + apbC BNILDI_14260 0.86 -2.4 2,880,173 + apbC BNILDI_14260 0.86 +0.1 2,880,332 + -0.2 2,880,357 + -0.3 2,880,388 + +0.7 2,880,391 + +0.3 2,880,392 - -0.6 2,880,433 + -0.3 2,880,434 - +0.2 2,880,461 - -1.2 2,880,478 + -1.2 2,880,495 + +0.3 2,880,516 - +0.6 2,880,524 + +0.3 2,880,531 - +0.7 2,880,532 + -1.2 2,880,533 - -2.8 2,880,533 - +0.7 2,880,533 - +0.3 2,880,541 - -0.6 2,880,553 + +0.2 2,880,571 - -0.2 2,880,599 + +1.8 2,880,599 + -0.3 2,880,600 - +0.6 2,880,680 - yehE BNILDI_14265 0.32 +0.1 2,880,715 + yehE BNILDI_14265 0.44 +2.2 2,880,758 + yehE BNILDI_14265 0.60 -1.0 2,880,758 + yehE BNILDI_14265 0.60 -0.5 2,880,758 + yehE BNILDI_14265 0.60 -0.2 2,880,758 + yehE BNILDI_14265 0.60 -0.3 2,880,759 - yehE BNILDI_14265 0.60 -0.3 2,880,759 - yehE BNILDI_14265 0.60 -0.5 2,880,759 - yehE BNILDI_14265 0.60 -0.2 2,880,888 + -0.7 2,880,919 - +0.0 2,880,920 + +1.0 2,880,921 - -0.2 2,880,921 - -0.5 2,880,921 - +0.5 2,880,972 - -0.4 2,880,976 + -0.3 2,881,416 - yehD BNILDI_14270 0.46 +0.4 2,881,850 - +0.4
Or see this region's nucleotide sequence