Strain Fitness in Escherichia coli ECRC62 around BNILDI_14265

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntapbC and yehE are separated by 262 nucleotidesyehE and yehD are separated by 292 nucleotidesyehD and yehC are separated by 80 nucleotides BNILDI_14260: apbC - iron-sulfur cluster carrier protein ApbC, at 2,879,218 to 2,880,327 apbC BNILDI_14265: yehE - Uncharacterized protein YehE, at 2,880,590 to 2,880,871 yehE BNILDI_14270: yehD - Uncharacterized fimbrial-like protein YehD, at 2,881,164 to 2,881,706 yehD BNILDI_14275: yehC - putative fimbrial chaperone YehC, at 2,881,787 to 2,882,461 yehC Position (kb) 2880 2881Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2879.656 kb on + strand, within apbCat 2879.737 kb on - strand, within apbCat 2880.060 kb on + strand, within apbCat 2880.061 kb on - strand, within apbCat 2880.069 kb on + strand, within apbCat 2880.173 kb on + strand, within apbCat 2880.173 kb on + strand, within apbCat 2880.332 kb on + strandat 2880.357 kb on + strandat 2880.388 kb on + strandat 2880.391 kb on + strandat 2880.392 kb on - strandat 2880.433 kb on + strandat 2880.434 kb on - strandat 2880.461 kb on - strandat 2880.478 kb on + strandat 2880.495 kb on + strandat 2880.516 kb on - strandat 2880.524 kb on + strandat 2880.531 kb on - strandat 2880.532 kb on + strandat 2880.533 kb on - strandat 2880.533 kb on - strandat 2880.533 kb on - strandat 2880.541 kb on - strandat 2880.553 kb on + strandat 2880.571 kb on - strandat 2880.599 kb on + strandat 2880.599 kb on + strandat 2880.600 kb on - strandat 2880.680 kb on - strand, within yehEat 2880.715 kb on + strand, within yehEat 2880.758 kb on + strand, within yehEat 2880.758 kb on + strand, within yehEat 2880.758 kb on + strand, within yehEat 2880.758 kb on + strand, within yehEat 2880.759 kb on - strand, within yehEat 2880.759 kb on - strand, within yehEat 2880.759 kb on - strand, within yehEat 2880.888 kb on + strandat 2880.919 kb on - strandat 2880.920 kb on + strandat 2880.921 kb on - strandat 2880.921 kb on - strandat 2880.921 kb on - strandat 2880.972 kb on - strandat 2880.976 kb on + strandat 2881.416 kb on - strand, within yehDat 2881.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,879,656 + apbC BNILDI_14260 0.39 +0.4
2,879,737 - apbC BNILDI_14260 0.47 -0.0
2,880,060 + apbC BNILDI_14260 0.76 -1.4
2,880,061 - apbC BNILDI_14260 0.76 +0.9
2,880,069 + apbC BNILDI_14260 0.77 -0.6
2,880,173 + apbC BNILDI_14260 0.86 -2.4
2,880,173 + apbC BNILDI_14260 0.86 +0.1
2,880,332 + -0.2
2,880,357 + -0.3
2,880,388 + +0.7
2,880,391 + +0.3
2,880,392 - -0.6
2,880,433 + -0.3
2,880,434 - +0.2
2,880,461 - -1.2
2,880,478 + -1.2
2,880,495 + +0.3
2,880,516 - +0.6
2,880,524 + +0.3
2,880,531 - +0.7
2,880,532 + -1.2
2,880,533 - -2.8
2,880,533 - +0.7
2,880,533 - +0.3
2,880,541 - -0.6
2,880,553 + +0.2
2,880,571 - -0.2
2,880,599 + +1.8
2,880,599 + -0.3
2,880,600 - +0.6
2,880,680 - yehE BNILDI_14265 0.32 +0.1
2,880,715 + yehE BNILDI_14265 0.44 +2.2
2,880,758 + yehE BNILDI_14265 0.60 -1.0
2,880,758 + yehE BNILDI_14265 0.60 -0.5
2,880,758 + yehE BNILDI_14265 0.60 -0.2
2,880,758 + yehE BNILDI_14265 0.60 -0.3
2,880,759 - yehE BNILDI_14265 0.60 -0.3
2,880,759 - yehE BNILDI_14265 0.60 -0.5
2,880,759 - yehE BNILDI_14265 0.60 -0.2
2,880,888 + -0.7
2,880,919 - +0.0
2,880,920 + +1.0
2,880,921 - -0.2
2,880,921 - -0.5
2,880,921 - +0.5
2,880,972 - -0.4
2,880,976 + -0.3
2,881,416 - yehD BNILDI_14270 0.46 +0.4
2,881,850 - +0.4

Or see this region's nucleotide sequence