Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dusC and yohP are separated by 372 nucleotides yohP and mdtQ are separated by 223 nucleotides
BNILDI_14105: dusC - tRNA dihydrouridine(16) synthase DusC, at 2,842,743 to 2,843,690
dusC
BNILDI_14110: yohP - protein YohP, at 2,844,063 to 2,844,146
yohP
BNILDI_14115: mdtQ - multidrug resistance outer membrane protein MdtQ, at 2,844,370 to 2,845,806
mdtQ
Position (kb)
2844
2845 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2843.101 kb on - strand, within dusC at 2843.101 kb on - strand, within dusC at 2843.429 kb on + strand, within dusC at 2843.458 kb on - strand, within dusC at 2843.458 kb on - strand, within dusC at 2843.562 kb on - strand, within dusC at 2843.593 kb on - strand, within dusC at 2843.698 kb on + strand at 2843.736 kb on + strand at 2844.117 kb on - strand, within yohP at 2844.123 kb on + strand, within yohP at 2844.250 kb on - strand at 2844.268 kb on + strand at 2844.292 kb on + strand at 2844.292 kb on + strand at 2844.417 kb on - strand at 2844.583 kb on - strand, within mdtQ at 2844.594 kb on - strand, within mdtQ at 2844.639 kb on - strand, within mdtQ at 2844.639 kb on - strand, within mdtQ at 2844.880 kb on - strand, within mdtQ at 2844.992 kb on + strand, within mdtQ at 2845.015 kb on - strand, within mdtQ at 2845.034 kb on + strand, within mdtQ at 2845.034 kb on + strand, within mdtQ at 2845.035 kb on - strand, within mdtQ at 2845.035 kb on - strand, within mdtQ at 2845.035 kb on - strand, within mdtQ at 2845.035 kb on - strand, within mdtQ at 2845.050 kb on + strand, within mdtQ at 2845.051 kb on - strand, within mdtQ at 2845.084 kb on - strand, within mdtQ at 2845.138 kb on - strand, within mdtQ
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,843,101 - dusC BNILDI_14105 0.38 +0.1 2,843,101 - dusC BNILDI_14105 0.38 -0.0 2,843,429 + dusC BNILDI_14105 0.72 -0.9 2,843,458 - dusC BNILDI_14105 0.75 +1.3 2,843,458 - dusC BNILDI_14105 0.75 +0.2 2,843,562 - dusC BNILDI_14105 0.86 +1.0 2,843,593 - dusC BNILDI_14105 0.90 +0.1 2,843,698 + +0.9 2,843,736 + +0.5 2,844,117 - yohP BNILDI_14110 0.64 -1.1 2,844,123 + yohP BNILDI_14110 0.71 +1.4 2,844,250 - -0.5 2,844,268 + +0.1 2,844,292 + -0.4 2,844,292 + -0.0 2,844,417 - -0.8 2,844,583 - mdtQ BNILDI_14115 0.15 -0.4 2,844,594 - mdtQ BNILDI_14115 0.16 -2.5 2,844,639 - mdtQ BNILDI_14115 0.19 -0.3 2,844,639 - mdtQ BNILDI_14115 0.19 +1.0 2,844,880 - mdtQ BNILDI_14115 0.35 +2.4 2,844,992 + mdtQ BNILDI_14115 0.43 -1.1 2,845,015 - mdtQ BNILDI_14115 0.45 -0.7 2,845,034 + mdtQ BNILDI_14115 0.46 +0.4 2,845,034 + mdtQ BNILDI_14115 0.46 -0.4 2,845,035 - mdtQ BNILDI_14115 0.46 -0.1 2,845,035 - mdtQ BNILDI_14115 0.46 -0.4 2,845,035 - mdtQ BNILDI_14115 0.46 -0.7 2,845,035 - mdtQ BNILDI_14115 0.46 +0.7 2,845,050 + mdtQ BNILDI_14115 0.47 +1.1 2,845,051 - mdtQ BNILDI_14115 0.47 +0.5 2,845,084 - mdtQ BNILDI_14115 0.50 +0.4 2,845,138 - mdtQ BNILDI_14115 0.53 +0.9
Or see this region's nucleotide sequence