Strain Fitness in Escherichia coli ECRC62 around BNILDI_13645

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfaA and yfaT overlap by 4 nucleotidesyfaT and yfaS are separated by 143 nucleotides BNILDI_13640: yfaA - DUF2138 domain-containing protein, at 2,739,833 to 2,741,521 yfaA BNILDI_13645: yfaT - DUF1175 domain-containing protein, at 2,741,518 to 2,742,141 yfaT BNILDI_13650: yfaS - Putative alpha-2-macroglobulin-like protein, at 2,742,285 to 2,746,679 yfaS Position (kb) 2741 2742 2743Strain fitness (log2 ratio) -1 0 1 2at 2740.654 kb on - strand, within yfaAat 2740.705 kb on + strand, within yfaAat 2740.777 kb on + strand, within yfaAat 2740.777 kb on + strand, within yfaAat 2740.778 kb on - strand, within yfaAat 2741.005 kb on + strand, within yfaAat 2741.149 kb on - strand, within yfaAat 2741.277 kb on + strand, within yfaAat 2741.278 kb on - strand, within yfaAat 2741.278 kb on - strand, within yfaAat 2741.278 kb on - strand, within yfaAat 2741.278 kb on - strand, within yfaAat 2741.306 kb on + strand, within yfaAat 2741.309 kb on - strand, within yfaAat 2741.407 kb on - strandat 2741.407 kb on - strandat 2741.621 kb on + strand, within yfaTat 2741.669 kb on - strand, within yfaTat 2741.852 kb on - strand, within yfaTat 2741.907 kb on - strand, within yfaTat 2741.963 kb on + strand, within yfaTat 2741.964 kb on - strand, within yfaTat 2741.992 kb on + strand, within yfaTat 2741.992 kb on + strand, within yfaTat 2741.992 kb on + strand, within yfaTat 2741.993 kb on - strand, within yfaTat 2742.055 kb on - strand, within yfaTat 2742.115 kb on + strandat 2742.213 kb on + strandat 2742.365 kb on + strandat 2742.366 kb on - strandat 2742.366 kb on - strandat 2742.456 kb on - strandat 2742.483 kb on + strandat 2742.512 kb on + strandat 2742.513 kb on - strandat 2742.562 kb on + strandat 2742.563 kb on - strandat 2742.585 kb on - strandat 2742.585 kb on - strandat 2742.602 kb on - strandat 2742.602 kb on - strandat 2742.602 kb on - strandat 2742.753 kb on + strand, within yfaSat 2742.753 kb on + strand, within yfaSat 2742.754 kb on - strand, within yfaSat 2742.787 kb on - strand, within yfaSat 2743.007 kb on + strand, within yfaSat 2743.007 kb on + strand, within yfaSat 2743.007 kb on + strand, within yfaSat 2743.007 kb on + strand, within yfaSat 2743.008 kb on - strand, within yfaSat 2743.027 kb on - strand, within yfaSat 2743.027 kb on - strand, within yfaSat 2743.110 kb on + strand, within yfaSat 2743.110 kb on + strand, within yfaSat 2743.111 kb on - strand, within yfaSat 2743.111 kb on - strand, within yfaSat 2743.112 kb on + strand, within yfaS

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,740,654 - yfaA BNILDI_13640 0.49 -0.4
2,740,705 + yfaA BNILDI_13640 0.52 -0.2
2,740,777 + yfaA BNILDI_13640 0.56 +0.3
2,740,777 + yfaA BNILDI_13640 0.56 -0.3
2,740,778 - yfaA BNILDI_13640 0.56 +0.1
2,741,005 + yfaA BNILDI_13640 0.69 -0.6
2,741,149 - yfaA BNILDI_13640 0.78 -0.0
2,741,277 + yfaA BNILDI_13640 0.85 -0.1
2,741,278 - yfaA BNILDI_13640 0.86 -0.1
2,741,278 - yfaA BNILDI_13640 0.86 -1.0
2,741,278 - yfaA BNILDI_13640 0.86 +0.0
2,741,278 - yfaA BNILDI_13640 0.86 +0.0
2,741,306 + yfaA BNILDI_13640 0.87 +0.9
2,741,309 - yfaA BNILDI_13640 0.87 +0.2
2,741,407 - -0.2
2,741,407 - +0.6
2,741,621 + yfaT BNILDI_13645 0.17 +0.1
2,741,669 - yfaT BNILDI_13645 0.24 +0.4
2,741,852 - yfaT BNILDI_13645 0.54 +0.2
2,741,907 - yfaT BNILDI_13645 0.62 -0.2
2,741,963 + yfaT BNILDI_13645 0.71 -1.7
2,741,964 - yfaT BNILDI_13645 0.71 +0.3
2,741,992 + yfaT BNILDI_13645 0.76 -1.0
2,741,992 + yfaT BNILDI_13645 0.76 -1.4
2,741,992 + yfaT BNILDI_13645 0.76 -0.7
2,741,993 - yfaT BNILDI_13645 0.76 +0.6
2,742,055 - yfaT BNILDI_13645 0.86 +0.7
2,742,115 + +1.2
2,742,213 + +0.9
2,742,365 + -0.5
2,742,366 - +0.4
2,742,366 - +0.6
2,742,456 - +1.8
2,742,483 + -0.6
2,742,512 + -0.3
2,742,513 - -1.7
2,742,562 + +0.1
2,742,563 - +0.7
2,742,585 - -0.0
2,742,585 - -0.1
2,742,602 - +0.1
2,742,602 - +0.1
2,742,602 - -0.3
2,742,753 + yfaS BNILDI_13650 0.11 -1.0
2,742,753 + yfaS BNILDI_13650 0.11 -0.4
2,742,754 - yfaS BNILDI_13650 0.11 -0.1
2,742,787 - yfaS BNILDI_13650 0.11 +1.5
2,743,007 + yfaS BNILDI_13650 0.16 +0.4
2,743,007 + yfaS BNILDI_13650 0.16 +0.3
2,743,007 + yfaS BNILDI_13650 0.16 -0.6
2,743,007 + yfaS BNILDI_13650 0.16 +0.3
2,743,008 - yfaS BNILDI_13650 0.16 -0.8
2,743,027 - yfaS BNILDI_13650 0.17 -0.5
2,743,027 - yfaS BNILDI_13650 0.17 +0.0
2,743,110 + yfaS BNILDI_13650 0.19 +1.5
2,743,110 + yfaS BNILDI_13650 0.19 +0.3
2,743,111 - yfaS BNILDI_13650 0.19 +0.9
2,743,111 - yfaS BNILDI_13650 0.19 -0.2
2,743,112 + yfaS BNILDI_13650 0.19 +0.1

Or see this region's nucleotide sequence