Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prmB and aroC are separated by 34 nucleotides aroC and mepA are separated by 3 nucleotides mepA and yfcA overlap by 1 nucleotides
BNILDI_13165: prmB - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 2,636,625 to 2,637,557
prmB
BNILDI_13170: aroC - chorismate synthase, at 2,637,592 to 2,638,677
aroC
BNILDI_13175: mepA - penicillin-insensitive murein endopeptidase, at 2,638,681 to 2,639,505
mepA
BNILDI_13180: yfcA - putative membrane transporter protein YfcA, at 2,639,505 to 2,640,314
yfcA
Position (kb)
2637
2638
2639 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2636.623 kb on - strand at 2636.623 kb on - strand at 2636.761 kb on + strand, within prmB at 2636.811 kb on - strand, within prmB at 2636.849 kb on + strand, within prmB at 2636.899 kb on - strand, within prmB at 2637.030 kb on - strand, within prmB at 2637.030 kb on - strand, within prmB at 2637.030 kb on - strand, within prmB at 2637.035 kb on - strand, within prmB at 2637.038 kb on + strand, within prmB at 2637.039 kb on - strand, within prmB at 2637.039 kb on - strand, within prmB at 2637.039 kb on - strand, within prmB at 2637.078 kb on + strand, within prmB at 2637.079 kb on - strand, within prmB at 2637.079 kb on - strand, within prmB at 2637.110 kb on - strand, within prmB at 2637.113 kb on + strand, within prmB at 2637.113 kb on + strand, within prmB at 2637.113 kb on + strand, within prmB at 2637.113 kb on + strand, within prmB at 2637.226 kb on - strand, within prmB at 2637.252 kb on + strand, within prmB at 2637.269 kb on + strand, within prmB at 2637.376 kb on - strand, within prmB at 2637.424 kb on + strand, within prmB at 2637.424 kb on + strand, within prmB at 2637.424 kb on + strand, within prmB at 2637.432 kb on - strand, within prmB at 2637.547 kb on - strand at 2637.556 kb on - strand at 2637.559 kb on + strand at 2637.560 kb on - strand at 2637.756 kb on + strand, within aroC at 2637.874 kb on + strand, within aroC at 2637.875 kb on - strand, within aroC at 2637.916 kb on + strand, within aroC at 2637.934 kb on + strand, within aroC at 2637.935 kb on - strand, within aroC at 2638.458 kb on + strand, within aroC at 2638.662 kb on + strand at 2638.803 kb on + strand, within mepA at 2638.804 kb on - strand, within mepA at 2639.109 kb on - strand, within mepA at 2639.307 kb on + strand, within mepA at 2639.307 kb on + strand, within mepA at 2639.307 kb on + strand, within mepA at 2639.321 kb on + strand, within mepA at 2639.503 kb on + strand at 2639.519 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,636,623 - -0.8 2,636,623 - -3.1 2,636,761 + prmB BNILDI_13165 0.15 -0.6 2,636,811 - prmB BNILDI_13165 0.20 -2.3 2,636,849 + prmB BNILDI_13165 0.24 -1.0 2,636,899 - prmB BNILDI_13165 0.29 -0.9 2,637,030 - prmB BNILDI_13165 0.43 -1.1 2,637,030 - prmB BNILDI_13165 0.43 -1.4 2,637,030 - prmB BNILDI_13165 0.43 -1.8 2,637,035 - prmB BNILDI_13165 0.44 -3.1 2,637,038 + prmB BNILDI_13165 0.44 -0.5 2,637,039 - prmB BNILDI_13165 0.44 +0.4 2,637,039 - prmB BNILDI_13165 0.44 -1.0 2,637,039 - prmB BNILDI_13165 0.44 -1.8 2,637,078 + prmB BNILDI_13165 0.49 -0.2 2,637,079 - prmB BNILDI_13165 0.49 -2.5 2,637,079 - prmB BNILDI_13165 0.49 -1.9 2,637,110 - prmB BNILDI_13165 0.52 -2.0 2,637,113 + prmB BNILDI_13165 0.52 -0.9 2,637,113 + prmB BNILDI_13165 0.52 -0.5 2,637,113 + prmB BNILDI_13165 0.52 +0.9 2,637,113 + prmB BNILDI_13165 0.52 -1.9 2,637,226 - prmB BNILDI_13165 0.64 -1.6 2,637,252 + prmB BNILDI_13165 0.67 +0.1 2,637,269 + prmB BNILDI_13165 0.69 +0.5 2,637,376 - prmB BNILDI_13165 0.80 -1.8 2,637,424 + prmB BNILDI_13165 0.86 +0.0 2,637,424 + prmB BNILDI_13165 0.86 +0.3 2,637,424 + prmB BNILDI_13165 0.86 -0.0 2,637,432 - prmB BNILDI_13165 0.86 -2.6 2,637,547 - +0.6 2,637,556 - -2.2 2,637,559 + -0.1 2,637,560 - -3.6 2,637,756 + aroC BNILDI_13170 0.15 -4.2 2,637,874 + aroC BNILDI_13170 0.26 -4.9 2,637,875 - aroC BNILDI_13170 0.26 -3.3 2,637,916 + aroC BNILDI_13170 0.30 -4.5 2,637,934 + aroC BNILDI_13170 0.31 -0.4 2,637,935 - aroC BNILDI_13170 0.32 -1.4 2,638,458 + aroC BNILDI_13170 0.80 -2.2 2,638,662 + +0.1 2,638,803 + mepA BNILDI_13175 0.15 +0.8 2,638,804 - mepA BNILDI_13175 0.15 -0.1 2,639,109 - mepA BNILDI_13175 0.52 +0.5 2,639,307 + mepA BNILDI_13175 0.76 -0.6 2,639,307 + mepA BNILDI_13175 0.76 +0.1 2,639,307 + mepA BNILDI_13175 0.76 -1.6 2,639,321 + mepA BNILDI_13175 0.78 -2.1 2,639,503 + +0.5 2,639,519 + +0.1
Or see this region's nucleotide sequence