Strain Fitness in Escherichia coli ECRC62 around BNILDI_13170

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntprmB and aroC are separated by 34 nucleotidesaroC and mepA are separated by 3 nucleotidesmepA and yfcA overlap by 1 nucleotides BNILDI_13165: prmB - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 2,636,625 to 2,637,557 prmB BNILDI_13170: aroC - chorismate synthase, at 2,637,592 to 2,638,677 aroC BNILDI_13175: mepA - penicillin-insensitive murein endopeptidase, at 2,638,681 to 2,639,505 mepA BNILDI_13180: yfcA - putative membrane transporter protein YfcA, at 2,639,505 to 2,640,314 yfcA Position (kb) 2637 2638 2639Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2636.623 kb on - strandat 2636.623 kb on - strandat 2636.761 kb on + strand, within prmBat 2636.811 kb on - strand, within prmBat 2636.849 kb on + strand, within prmBat 2636.899 kb on - strand, within prmBat 2637.030 kb on - strand, within prmBat 2637.030 kb on - strand, within prmBat 2637.030 kb on - strand, within prmBat 2637.035 kb on - strand, within prmBat 2637.038 kb on + strand, within prmBat 2637.039 kb on - strand, within prmBat 2637.039 kb on - strand, within prmBat 2637.039 kb on - strand, within prmBat 2637.078 kb on + strand, within prmBat 2637.079 kb on - strand, within prmBat 2637.079 kb on - strand, within prmBat 2637.110 kb on - strand, within prmBat 2637.113 kb on + strand, within prmBat 2637.113 kb on + strand, within prmBat 2637.113 kb on + strand, within prmBat 2637.113 kb on + strand, within prmBat 2637.226 kb on - strand, within prmBat 2637.252 kb on + strand, within prmBat 2637.269 kb on + strand, within prmBat 2637.376 kb on - strand, within prmBat 2637.424 kb on + strand, within prmBat 2637.424 kb on + strand, within prmBat 2637.424 kb on + strand, within prmBat 2637.432 kb on - strand, within prmBat 2637.547 kb on - strandat 2637.556 kb on - strandat 2637.559 kb on + strandat 2637.560 kb on - strandat 2637.756 kb on + strand, within aroCat 2637.874 kb on + strand, within aroCat 2637.875 kb on - strand, within aroCat 2637.916 kb on + strand, within aroCat 2637.934 kb on + strand, within aroCat 2637.935 kb on - strand, within aroCat 2638.458 kb on + strand, within aroCat 2638.662 kb on + strandat 2638.803 kb on + strand, within mepAat 2638.804 kb on - strand, within mepAat 2639.109 kb on - strand, within mepAat 2639.307 kb on + strand, within mepAat 2639.307 kb on + strand, within mepAat 2639.307 kb on + strand, within mepAat 2639.321 kb on + strand, within mepAat 2639.503 kb on + strandat 2639.519 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,636,623 - -0.8
2,636,623 - -3.1
2,636,761 + prmB BNILDI_13165 0.15 -0.6
2,636,811 - prmB BNILDI_13165 0.20 -2.3
2,636,849 + prmB BNILDI_13165 0.24 -1.0
2,636,899 - prmB BNILDI_13165 0.29 -0.9
2,637,030 - prmB BNILDI_13165 0.43 -1.1
2,637,030 - prmB BNILDI_13165 0.43 -1.4
2,637,030 - prmB BNILDI_13165 0.43 -1.8
2,637,035 - prmB BNILDI_13165 0.44 -3.1
2,637,038 + prmB BNILDI_13165 0.44 -0.5
2,637,039 - prmB BNILDI_13165 0.44 +0.4
2,637,039 - prmB BNILDI_13165 0.44 -1.0
2,637,039 - prmB BNILDI_13165 0.44 -1.8
2,637,078 + prmB BNILDI_13165 0.49 -0.2
2,637,079 - prmB BNILDI_13165 0.49 -2.5
2,637,079 - prmB BNILDI_13165 0.49 -1.9
2,637,110 - prmB BNILDI_13165 0.52 -2.0
2,637,113 + prmB BNILDI_13165 0.52 -0.9
2,637,113 + prmB BNILDI_13165 0.52 -0.5
2,637,113 + prmB BNILDI_13165 0.52 +0.9
2,637,113 + prmB BNILDI_13165 0.52 -1.9
2,637,226 - prmB BNILDI_13165 0.64 -1.6
2,637,252 + prmB BNILDI_13165 0.67 +0.1
2,637,269 + prmB BNILDI_13165 0.69 +0.5
2,637,376 - prmB BNILDI_13165 0.80 -1.8
2,637,424 + prmB BNILDI_13165 0.86 +0.0
2,637,424 + prmB BNILDI_13165 0.86 +0.3
2,637,424 + prmB BNILDI_13165 0.86 -0.0
2,637,432 - prmB BNILDI_13165 0.86 -2.6
2,637,547 - +0.6
2,637,556 - -2.2
2,637,559 + -0.1
2,637,560 - -3.6
2,637,756 + aroC BNILDI_13170 0.15 -4.2
2,637,874 + aroC BNILDI_13170 0.26 -4.9
2,637,875 - aroC BNILDI_13170 0.26 -3.3
2,637,916 + aroC BNILDI_13170 0.30 -4.5
2,637,934 + aroC BNILDI_13170 0.31 -0.4
2,637,935 - aroC BNILDI_13170 0.32 -1.4
2,638,458 + aroC BNILDI_13170 0.80 -2.2
2,638,662 + +0.1
2,638,803 + mepA BNILDI_13175 0.15 +0.8
2,638,804 - mepA BNILDI_13175 0.15 -0.1
2,639,109 - mepA BNILDI_13175 0.52 +0.5
2,639,307 + mepA BNILDI_13175 0.76 -0.6
2,639,307 + mepA BNILDI_13175 0.76 +0.1
2,639,307 + mepA BNILDI_13175 0.76 -1.6
2,639,321 + mepA BNILDI_13175 0.78 -2.1
2,639,503 + +0.5
2,639,519 + +0.1

Or see this region's nucleotide sequence