Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cysT and cysW overlap by 1 nucleotides cysW and cysA overlap by 11 nucleotides cysA and cysM are separated by 133 nucleotides
BNILDI_12700: cysT - sulfate/thiosulfate ABC transporter permease CysT, at 2,546,124 to 2,546,957
cysT
BNILDI_12705: cysW - sulfate/thiosulfate ABC transporter permease CysW, at 2,546,957 to 2,547,832
cysW
BNILDI_12710: cysA - sulfate/thiosulfate ABC transporter ATP-binding protein CysA, at 2,547,822 to 2,548,919
cysA
BNILDI_12715: cysM - cysteine synthase B, at 2,549,053 to 2,549,964
cysM
Position (kb)
2547
2548
2549 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2546.955 kb on + strand at 2547.077 kb on - strand, within cysW at 2547.144 kb on + strand, within cysW at 2547.144 kb on + strand, within cysW at 2547.238 kb on + strand, within cysW at 2547.318 kb on - strand, within cysW at 2547.382 kb on + strand, within cysW at 2547.383 kb on - strand, within cysW at 2547.692 kb on + strand, within cysW at 2547.692 kb on + strand, within cysW at 2547.693 kb on - strand, within cysW at 2547.996 kb on - strand, within cysA at 2548.441 kb on + strand, within cysA at 2548.857 kb on + strand at 2548.857 kb on + strand at 2548.858 kb on - strand at 2548.920 kb on + strand at 2548.936 kb on + strand at 2548.973 kb on + strand at 2548.988 kb on + strand at 2549.004 kb on + strand at 2549.039 kb on + strand at 2549.039 kb on + strand at 2549.039 kb on + strand at 2549.040 kb on - strand at 2549.063 kb on + strand at 2549.064 kb on - strand at 2549.082 kb on + strand at 2549.368 kb on + strand, within cysM at 2549.368 kb on + strand, within cysM at 2549.475 kb on + strand, within cysM at 2549.475 kb on + strand, within cysM at 2549.478 kb on + strand, within cysM at 2549.503 kb on + strand, within cysM at 2549.504 kb on - strand, within cysM at 2549.607 kb on + strand, within cysM
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,546,955 + -2.1 2,547,077 - cysW BNILDI_12705 0.14 -0.3 2,547,144 + cysW BNILDI_12705 0.21 +0.1 2,547,144 + cysW BNILDI_12705 0.21 -1.6 2,547,238 + cysW BNILDI_12705 0.32 -3.2 2,547,318 - cysW BNILDI_12705 0.41 -2.5 2,547,382 + cysW BNILDI_12705 0.49 -1.9 2,547,383 - cysW BNILDI_12705 0.49 -0.0 2,547,692 + cysW BNILDI_12705 0.84 -2.8 2,547,692 + cysW BNILDI_12705 0.84 -2.2 2,547,693 - cysW BNILDI_12705 0.84 -3.1 2,547,996 - cysA BNILDI_12710 0.16 -4.2 2,548,441 + cysA BNILDI_12710 0.56 -0.8 2,548,857 + -1.9 2,548,857 + -2.8 2,548,858 - -2.6 2,548,920 + +0.5 2,548,936 + +0.7 2,548,973 + +2.2 2,548,988 + -0.1 2,549,004 + +0.8 2,549,039 + +0.4 2,549,039 + +0.3 2,549,039 + +0.8 2,549,040 - +0.8 2,549,063 + -2.3 2,549,064 - +1.0 2,549,082 + -0.8 2,549,368 + cysM BNILDI_12715 0.35 -2.6 2,549,368 + cysM BNILDI_12715 0.35 -0.2 2,549,475 + cysM BNILDI_12715 0.46 -0.1 2,549,475 + cysM BNILDI_12715 0.46 -0.4 2,549,478 + cysM BNILDI_12715 0.47 -0.0 2,549,503 + cysM BNILDI_12715 0.49 -1.0 2,549,504 - cysM BNILDI_12715 0.49 -0.9 2,549,607 + cysM BNILDI_12715 0.61 +0.1
Or see this region's nucleotide sequence