Strain Fitness in Escherichia coli ECRC62 around BNILDI_12710

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysT and cysW overlap by 1 nucleotidescysW and cysA overlap by 11 nucleotidescysA and cysM are separated by 133 nucleotides BNILDI_12700: cysT - sulfate/thiosulfate ABC transporter permease CysT, at 2,546,124 to 2,546,957 cysT BNILDI_12705: cysW - sulfate/thiosulfate ABC transporter permease CysW, at 2,546,957 to 2,547,832 cysW BNILDI_12710: cysA - sulfate/thiosulfate ABC transporter ATP-binding protein CysA, at 2,547,822 to 2,548,919 cysA BNILDI_12715: cysM - cysteine synthase B, at 2,549,053 to 2,549,964 cysM Position (kb) 2547 2548 2549Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2546.955 kb on + strandat 2547.077 kb on - strand, within cysWat 2547.144 kb on + strand, within cysWat 2547.144 kb on + strand, within cysWat 2547.238 kb on + strand, within cysWat 2547.318 kb on - strand, within cysWat 2547.382 kb on + strand, within cysWat 2547.383 kb on - strand, within cysWat 2547.692 kb on + strand, within cysWat 2547.692 kb on + strand, within cysWat 2547.693 kb on - strand, within cysWat 2547.996 kb on - strand, within cysAat 2548.441 kb on + strand, within cysAat 2548.857 kb on + strandat 2548.857 kb on + strandat 2548.858 kb on - strandat 2548.920 kb on + strandat 2548.936 kb on + strandat 2548.973 kb on + strandat 2548.988 kb on + strandat 2549.004 kb on + strandat 2549.039 kb on + strandat 2549.039 kb on + strandat 2549.039 kb on + strandat 2549.040 kb on - strandat 2549.063 kb on + strandat 2549.064 kb on - strandat 2549.082 kb on + strandat 2549.368 kb on + strand, within cysMat 2549.368 kb on + strand, within cysMat 2549.475 kb on + strand, within cysMat 2549.475 kb on + strand, within cysMat 2549.478 kb on + strand, within cysMat 2549.503 kb on + strand, within cysMat 2549.504 kb on - strand, within cysMat 2549.607 kb on + strand, within cysM

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,546,955 + -2.1
2,547,077 - cysW BNILDI_12705 0.14 -0.3
2,547,144 + cysW BNILDI_12705 0.21 +0.1
2,547,144 + cysW BNILDI_12705 0.21 -1.6
2,547,238 + cysW BNILDI_12705 0.32 -3.2
2,547,318 - cysW BNILDI_12705 0.41 -2.5
2,547,382 + cysW BNILDI_12705 0.49 -1.9
2,547,383 - cysW BNILDI_12705 0.49 -0.0
2,547,692 + cysW BNILDI_12705 0.84 -2.8
2,547,692 + cysW BNILDI_12705 0.84 -2.2
2,547,693 - cysW BNILDI_12705 0.84 -3.1
2,547,996 - cysA BNILDI_12710 0.16 -4.2
2,548,441 + cysA BNILDI_12710 0.56 -0.8
2,548,857 + -1.9
2,548,857 + -2.8
2,548,858 - -2.6
2,548,920 + +0.5
2,548,936 + +0.7
2,548,973 + +2.2
2,548,988 + -0.1
2,549,004 + +0.8
2,549,039 + +0.4
2,549,039 + +0.3
2,549,039 + +0.8
2,549,040 - +0.8
2,549,063 + -2.3
2,549,064 - +1.0
2,549,082 + -0.8
2,549,368 + cysM BNILDI_12715 0.35 -2.6
2,549,368 + cysM BNILDI_12715 0.35 -0.2
2,549,475 + cysM BNILDI_12715 0.46 -0.1
2,549,475 + cysM BNILDI_12715 0.46 -0.4
2,549,478 + cysM BNILDI_12715 0.47 -0.0
2,549,503 + cysM BNILDI_12715 0.49 -1.0
2,549,504 - cysM BNILDI_12715 0.49 -0.9
2,549,607 + cysM BNILDI_12715 0.61 +0.1

Or see this region's nucleotide sequence