Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_12575 and BNILDI_12580 are separated by 288 nucleotides BNILDI_12580 and BNILDI_12585 are separated by 38 nucleotides BNILDI_12585 and BNILDI_12590 are separated by 138 nucleotides
BNILDI_12575: BNILDI_12575 - hypothetical protein, at 2,524,018 to 2,526,198
_12575
BNILDI_12580: BNILDI_12580 - No significant similarities, at 2,526,487 to 2,526,717
_12580
BNILDI_12585: BNILDI_12585 - hypothetical protein, at 2,526,756 to 2,527,043
_12585
BNILDI_12590: BNILDI_12590 - hypothetical protein, at 2,527,182 to 2,527,724
_12590
Position (kb)
2526
2527 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2525.565 kb on + strand, within BNILDI_12575 at 2525.718 kb on - strand, within BNILDI_12575 at 2525.718 kb on - strand, within BNILDI_12575 at 2525.722 kb on - strand, within BNILDI_12575 at 2525.752 kb on + strand, within BNILDI_12575 at 2525.753 kb on - strand, within BNILDI_12575 at 2525.758 kb on + strand, within BNILDI_12575 at 2525.759 kb on - strand, within BNILDI_12575 at 2525.909 kb on - strand, within BNILDI_12575 at 2526.042 kb on + strand at 2526.042 kb on + strand at 2526.075 kb on + strand at 2526.170 kb on + strand at 2526.171 kb on - strand at 2526.173 kb on + strand at 2526.173 kb on + strand at 2526.174 kb on - strand at 2526.174 kb on - strand at 2526.174 kb on - strand at 2526.174 kb on - strand at 2526.174 kb on - strand at 2526.175 kb on + strand at 2526.176 kb on - strand at 2526.176 kb on - strand at 2526.201 kb on + strand at 2526.330 kb on + strand at 2526.485 kb on - strand at 2526.620 kb on + strand, within BNILDI_12580 at 2526.621 kb on - strand, within BNILDI_12580 at 2526.621 kb on - strand, within BNILDI_12580 at 2526.648 kb on + strand, within BNILDI_12580 at 2526.649 kb on - strand, within BNILDI_12580 at 2526.652 kb on + strand, within BNILDI_12580 at 2526.652 kb on + strand, within BNILDI_12580 at 2526.653 kb on - strand, within BNILDI_12580 at 2526.705 kb on + strand at 2526.742 kb on + strand at 2526.743 kb on - strand at 2526.743 kb on - strand at 2526.743 kb on - strand at 2526.743 kb on - strand at 2526.743 kb on - strand at 2526.777 kb on - strand at 2526.777 kb on - strand at 2526.798 kb on + strand, within BNILDI_12585 at 2526.988 kb on - strand, within BNILDI_12585 at 2526.988 kb on - strand, within BNILDI_12585 at 2527.071 kb on - strand at 2527.072 kb on + strand at 2527.073 kb on - strand at 2527.073 kb on - strand at 2527.157 kb on + strand at 2527.433 kb on - strand, within BNILDI_12590
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,525,565 + BNILDI_12575 0.71 +0.5 2,525,718 - BNILDI_12575 0.78 -0.3 2,525,718 - BNILDI_12575 0.78 +0.8 2,525,722 - BNILDI_12575 0.78 +0.1 2,525,752 + BNILDI_12575 0.80 -0.7 2,525,753 - BNILDI_12575 0.80 -0.3 2,525,758 + BNILDI_12575 0.80 +0.9 2,525,759 - BNILDI_12575 0.80 -0.1 2,525,909 - BNILDI_12575 0.87 -0.0 2,526,042 + -0.7 2,526,042 + +0.0 2,526,075 + -2.8 2,526,170 + +0.4 2,526,171 - +1.1 2,526,173 + -1.8 2,526,173 + +0.6 2,526,174 - -0.5 2,526,174 - -0.1 2,526,174 - -0.6 2,526,174 - +0.1 2,526,174 - -0.6 2,526,175 + -0.5 2,526,176 - +0.9 2,526,176 - -1.8 2,526,201 + -1.3 2,526,330 + +1.1 2,526,485 - -1.7 2,526,620 + BNILDI_12580 0.58 +0.0 2,526,621 - BNILDI_12580 0.58 +0.4 2,526,621 - BNILDI_12580 0.58 -0.1 2,526,648 + BNILDI_12580 0.70 -0.7 2,526,649 - BNILDI_12580 0.70 -0.5 2,526,652 + BNILDI_12580 0.71 -0.5 2,526,652 + BNILDI_12580 0.71 -0.3 2,526,653 - BNILDI_12580 0.72 +0.6 2,526,705 + -0.3 2,526,742 + -0.4 2,526,743 - -0.6 2,526,743 - +0.2 2,526,743 - +0.5 2,526,743 - +0.0 2,526,743 - -0.6 2,526,777 - +0.6 2,526,777 - +0.9 2,526,798 + BNILDI_12585 0.15 -0.2 2,526,988 - BNILDI_12585 0.81 +1.2 2,526,988 - BNILDI_12585 0.81 -0.4 2,527,071 - -0.7 2,527,072 + -0.8 2,527,073 - +0.1 2,527,073 - +0.3 2,527,157 + -0.2 2,527,433 - BNILDI_12590 0.46 +0.0
Or see this region's nucleotide sequence