Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pta and eutM overlap by 4 nucleotides eutM and eutN are separated by 106 nucleotides eutN and eutE are separated by 11 nucleotides eutE and eutJ are separated by 10 nucleotides eutJ and eutG overlap by 11 nucleotides
BNILDI_12520: pta - phosphate acetyltransferase, at 2,513,403 to 2,514,419
pta
BNILDI_12525: eutM - ethanolamine utilization microcompartment protein EutM, at 2,514,416 to 2,514,751
eutM
BNILDI_12530: eutN - ethanolamine utilization microcompartment protein EutN, at 2,514,858 to 2,515,145
eutN
BNILDI_12535: eutE - Acetaldehyde dehydrogenase (acetylating) EutE, at 2,515,157 to 2,516,560
eutE
BNILDI_12540: eutJ - ethanolamine utilization protein EutJ, at 2,516,571 to 2,517,407
eutJ
BNILDI_12545: eutG - ethanolamine utilization ethanol dehydrogenase EutG, at 2,517,397 to 2,518,584
eutG
Position (kb)
2515
2516
2517 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2514.225 kb on - strand, within pta at 2514.280 kb on + strand, within pta at 2514.280 kb on + strand, within pta at 2514.281 kb on - strand, within pta at 2514.443 kb on - strand at 2514.581 kb on - strand, within eutM at 2514.666 kb on + strand, within eutM at 2514.673 kb on - strand, within eutM at 2514.802 kb on + strand at 2514.840 kb on + strand at 2514.840 kb on + strand at 2514.959 kb on + strand, within eutN at 2515.143 kb on + strand at 2515.581 kb on + strand, within eutE at 2515.581 kb on + strand, within eutE at 2515.581 kb on + strand, within eutE at 2515.585 kb on + strand, within eutE at 2515.726 kb on + strand, within eutE at 2515.977 kb on + strand, within eutE at 2515.994 kb on - strand, within eutE at 2516.387 kb on - strand, within eutE at 2516.532 kb on + strand at 2516.535 kb on + strand at 2516.993 kb on - strand, within eutJ at 2516.993 kb on - strand, within eutJ at 2516.993 kb on - strand, within eutJ at 2516.993 kb on - strand, within eutJ at 2517.114 kb on - strand, within eutJ at 2517.114 kb on - strand, within eutJ at 2517.138 kb on + strand, within eutJ at 2517.139 kb on - strand, within eutJ at 2517.244 kb on + strand, within eutJ at 2517.244 kb on + strand, within eutJ at 2517.266 kb on + strand, within eutJ at 2517.267 kb on - strand, within eutJ at 2517.325 kb on + strand at 2517.368 kb on + strand at 2517.394 kb on + strand at 2517.394 kb on + strand at 2517.394 kb on + strand at 2517.395 kb on - strand at 2517.395 kb on - strand at 2517.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,514,225 - pta BNILDI_12520 0.81 +0.7 2,514,280 + pta BNILDI_12520 0.86 +0.2 2,514,280 + pta BNILDI_12520 0.86 +0.4 2,514,281 - pta BNILDI_12520 0.86 -1.0 2,514,443 - +0.7 2,514,581 - eutM BNILDI_12525 0.49 -0.2 2,514,666 + eutM BNILDI_12525 0.74 -2.5 2,514,673 - eutM BNILDI_12525 0.76 -0.9 2,514,802 + +0.6 2,514,840 + -0.1 2,514,840 + -1.2 2,514,959 + eutN BNILDI_12530 0.35 +0.3 2,515,143 + -0.0 2,515,581 + eutE BNILDI_12535 0.30 +2.6 2,515,581 + eutE BNILDI_12535 0.30 +0.2 2,515,581 + eutE BNILDI_12535 0.30 +1.5 2,515,585 + eutE BNILDI_12535 0.30 -0.3 2,515,726 + eutE BNILDI_12535 0.41 +0.2 2,515,977 + eutE BNILDI_12535 0.58 +0.9 2,515,994 - eutE BNILDI_12535 0.60 +0.1 2,516,387 - eutE BNILDI_12535 0.88 -0.6 2,516,532 + +1.1 2,516,535 + -1.0 2,516,993 - eutJ BNILDI_12540 0.50 +0.1 2,516,993 - eutJ BNILDI_12540 0.50 -0.8 2,516,993 - eutJ BNILDI_12540 0.50 +0.6 2,516,993 - eutJ BNILDI_12540 0.50 +0.4 2,517,114 - eutJ BNILDI_12540 0.65 -0.2 2,517,114 - eutJ BNILDI_12540 0.65 +0.7 2,517,138 + eutJ BNILDI_12540 0.68 -2.3 2,517,139 - eutJ BNILDI_12540 0.68 +1.2 2,517,244 + eutJ BNILDI_12540 0.80 +0.5 2,517,244 + eutJ BNILDI_12540 0.80 +0.0 2,517,266 + eutJ BNILDI_12540 0.83 -0.5 2,517,267 - eutJ BNILDI_12540 0.83 -0.6 2,517,325 + +0.8 2,517,368 + -0.2 2,517,394 + -0.2 2,517,394 + +0.3 2,517,394 + -0.9 2,517,395 - +0.7 2,517,395 - -0.2 2,517,395 - -0.0
Or see this region's nucleotide sequence