Strain Fitness in Escherichia coli ECRC62 around BNILDI_12535

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpta and eutM overlap by 4 nucleotideseutM and eutN are separated by 106 nucleotideseutN and eutE are separated by 11 nucleotideseutE and eutJ are separated by 10 nucleotideseutJ and eutG overlap by 11 nucleotides BNILDI_12520: pta - phosphate acetyltransferase, at 2,513,403 to 2,514,419 pta BNILDI_12525: eutM - ethanolamine utilization microcompartment protein EutM, at 2,514,416 to 2,514,751 eutM BNILDI_12530: eutN - ethanolamine utilization microcompartment protein EutN, at 2,514,858 to 2,515,145 eutN BNILDI_12535: eutE - Acetaldehyde dehydrogenase (acetylating) EutE, at 2,515,157 to 2,516,560 eutE BNILDI_12540: eutJ - ethanolamine utilization protein EutJ, at 2,516,571 to 2,517,407 eutJ BNILDI_12545: eutG - ethanolamine utilization ethanol dehydrogenase EutG, at 2,517,397 to 2,518,584 eutG Position (kb) 2515 2516 2517Strain fitness (log2 ratio) -2 -1 0 1 2at 2514.225 kb on - strand, within ptaat 2514.280 kb on + strand, within ptaat 2514.280 kb on + strand, within ptaat 2514.281 kb on - strand, within ptaat 2514.443 kb on - strandat 2514.581 kb on - strand, within eutMat 2514.666 kb on + strand, within eutMat 2514.673 kb on - strand, within eutMat 2514.802 kb on + strandat 2514.840 kb on + strandat 2514.840 kb on + strandat 2514.959 kb on + strand, within eutNat 2515.143 kb on + strandat 2515.581 kb on + strand, within eutEat 2515.581 kb on + strand, within eutEat 2515.581 kb on + strand, within eutEat 2515.585 kb on + strand, within eutEat 2515.726 kb on + strand, within eutEat 2515.977 kb on + strand, within eutEat 2515.994 kb on - strand, within eutEat 2516.387 kb on - strand, within eutEat 2516.532 kb on + strandat 2516.535 kb on + strandat 2516.993 kb on - strand, within eutJat 2516.993 kb on - strand, within eutJat 2516.993 kb on - strand, within eutJat 2516.993 kb on - strand, within eutJat 2517.114 kb on - strand, within eutJat 2517.114 kb on - strand, within eutJat 2517.138 kb on + strand, within eutJat 2517.139 kb on - strand, within eutJat 2517.244 kb on + strand, within eutJat 2517.244 kb on + strand, within eutJat 2517.266 kb on + strand, within eutJat 2517.267 kb on - strand, within eutJat 2517.325 kb on + strandat 2517.368 kb on + strandat 2517.394 kb on + strandat 2517.394 kb on + strandat 2517.394 kb on + strandat 2517.395 kb on - strandat 2517.395 kb on - strandat 2517.395 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,514,225 - pta BNILDI_12520 0.81 +0.7
2,514,280 + pta BNILDI_12520 0.86 +0.2
2,514,280 + pta BNILDI_12520 0.86 +0.4
2,514,281 - pta BNILDI_12520 0.86 -1.0
2,514,443 - +0.7
2,514,581 - eutM BNILDI_12525 0.49 -0.2
2,514,666 + eutM BNILDI_12525 0.74 -2.5
2,514,673 - eutM BNILDI_12525 0.76 -0.9
2,514,802 + +0.6
2,514,840 + -0.1
2,514,840 + -1.2
2,514,959 + eutN BNILDI_12530 0.35 +0.3
2,515,143 + -0.0
2,515,581 + eutE BNILDI_12535 0.30 +2.6
2,515,581 + eutE BNILDI_12535 0.30 +0.2
2,515,581 + eutE BNILDI_12535 0.30 +1.5
2,515,585 + eutE BNILDI_12535 0.30 -0.3
2,515,726 + eutE BNILDI_12535 0.41 +0.2
2,515,977 + eutE BNILDI_12535 0.58 +0.9
2,515,994 - eutE BNILDI_12535 0.60 +0.1
2,516,387 - eutE BNILDI_12535 0.88 -0.6
2,516,532 + +1.1
2,516,535 + -1.0
2,516,993 - eutJ BNILDI_12540 0.50 +0.1
2,516,993 - eutJ BNILDI_12540 0.50 -0.8
2,516,993 - eutJ BNILDI_12540 0.50 +0.6
2,516,993 - eutJ BNILDI_12540 0.50 +0.4
2,517,114 - eutJ BNILDI_12540 0.65 -0.2
2,517,114 - eutJ BNILDI_12540 0.65 +0.7
2,517,138 + eutJ BNILDI_12540 0.68 -2.3
2,517,139 - eutJ BNILDI_12540 0.68 +1.2
2,517,244 + eutJ BNILDI_12540 0.80 +0.5
2,517,244 + eutJ BNILDI_12540 0.80 +0.0
2,517,266 + eutJ BNILDI_12540 0.83 -0.5
2,517,267 - eutJ BNILDI_12540 0.83 -0.6
2,517,325 + +0.8
2,517,368 + -0.2
2,517,394 + -0.2
2,517,394 + +0.3
2,517,394 + -0.9
2,517,395 - +0.7
2,517,395 - -0.2
2,517,395 - -0.0

Or see this region's nucleotide sequence