Strain Fitness in Escherichia coli ECRC62 around BNILDI_12510

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nteutS and eutP are separated by 12 nucleotideseutP and eutQ overlap by 26 nucleotideseutQ and eutT overlap by 4 nucleotideseutT and pta overlap by 4 nucleotides BNILDI_12500: eutS - Bacterial microcompartment shell protein EutS, at 2,511,103 to 2,511,438 eutS BNILDI_12505: eutP - ethanolamine utilization acetate kinase EutP, at 2,511,451 to 2,511,930 eutP BNILDI_12510: eutQ - ethanolamine utilization acetate kinase EutQ, at 2,511,905 to 2,512,606 eutQ BNILDI_12515: eutT - ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT, at 2,512,603 to 2,513,406 eutT BNILDI_12520: pta - phosphate acetyltransferase, at 2,513,403 to 2,514,419 pta Position (kb) 2511 2512 2513Strain fitness (log2 ratio) -1 0 1at 2510.941 kb on + strandat 2511.003 kb on - strandat 2511.049 kb on + strandat 2511.050 kb on - strandat 2511.231 kb on + strand, within eutSat 2511.232 kb on - strand, within eutSat 2511.359 kb on + strand, within eutSat 2511.404 kb on + strand, within eutSat 2511.411 kb on + strandat 2511.411 kb on + strandat 2511.505 kb on - strand, within eutPat 2511.524 kb on - strand, within eutPat 2511.524 kb on - strand, within eutPat 2511.525 kb on + strand, within eutPat 2511.525 kb on + strand, within eutPat 2511.644 kb on + strand, within eutPat 2511.644 kb on + strand, within eutPat 2511.645 kb on - strand, within eutPat 2511.658 kb on + strand, within eutPat 2511.658 kb on + strand, within eutPat 2511.748 kb on - strand, within eutPat 2511.831 kb on - strand, within eutPat 2511.932 kb on - strandat 2511.991 kb on + strand, within eutQat 2512.289 kb on - strand, within eutQat 2512.388 kb on - strand, within eutQat 2512.428 kb on - strand, within eutQat 2512.428 kb on - strand, within eutQat 2512.571 kb on + strandat 2512.572 kb on - strandat 2512.631 kb on + strandat 2512.644 kb on + strandat 2512.644 kb on + strandat 2513.047 kb on - strand, within eutTat 2513.280 kb on - strand, within eutT

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,510,941 + +0.8
2,511,003 - +1.0
2,511,049 + -1.2
2,511,050 - +0.1
2,511,231 + eutS BNILDI_12500 0.38 +0.9
2,511,232 - eutS BNILDI_12500 0.38 +0.3
2,511,359 + eutS BNILDI_12500 0.76 -0.2
2,511,404 + eutS BNILDI_12500 0.90 +0.0
2,511,411 + -0.6
2,511,411 + +0.7
2,511,505 - eutP BNILDI_12505 0.11 +0.2
2,511,524 - eutP BNILDI_12505 0.15 +1.1
2,511,524 - eutP BNILDI_12505 0.15 -0.3
2,511,525 + eutP BNILDI_12505 0.15 -0.6
2,511,525 + eutP BNILDI_12505 0.15 +0.6
2,511,644 + eutP BNILDI_12505 0.40 +1.0
2,511,644 + eutP BNILDI_12505 0.40 +0.2
2,511,645 - eutP BNILDI_12505 0.40 -0.2
2,511,658 + eutP BNILDI_12505 0.43 +0.3
2,511,658 + eutP BNILDI_12505 0.43 +0.7
2,511,748 - eutP BNILDI_12505 0.62 -0.2
2,511,831 - eutP BNILDI_12505 0.79 -0.6
2,511,932 - -0.1
2,511,991 + eutQ BNILDI_12510 0.12 -1.3
2,512,289 - eutQ BNILDI_12510 0.55 -0.8
2,512,388 - eutQ BNILDI_12510 0.69 +0.1
2,512,428 - eutQ BNILDI_12510 0.75 -1.5
2,512,428 - eutQ BNILDI_12510 0.75 -0.5
2,512,571 + +0.0
2,512,572 - +0.4
2,512,631 + +0.5
2,512,644 + +0.3
2,512,644 + -0.1
2,513,047 - eutT BNILDI_12515 0.55 -0.2
2,513,280 - eutT BNILDI_12515 0.84 +0.4

Or see this region's nucleotide sequence