Strain Fitness in Escherichia coli ECRC62 around BNILDI_12200

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntder and BNILDI_12200 are separated by 68 nucleotidesBNILDI_12200 and xseA overlap by 4 nucleotides BNILDI_12195: der - ribosome biogenesis GTPase Der, at 2,447,728 to 2,449,200 der BNILDI_12200: BNILDI_12200 - Protein, at 2,449,269 to 2,449,484 _12200 BNILDI_12205: xseA - exodeoxyribonuclease VII large subunit, at 2,449,481 to 2,450,851 xseA Position (kb) 2449 2450Strain fitness (log2 ratio) -3 -2 -1 0 1at 2449.199 kb on - strandat 2449.212 kb on + strandat 2449.233 kb on + strandat 2449.241 kb on + strandat 2449.241 kb on + strandat 2449.268 kb on + strandat 2449.269 kb on - strandat 2449.422 kb on + strand, within BNILDI_12200at 2449.423 kb on - strand, within BNILDI_12200at 2449.423 kb on - strand, within BNILDI_12200at 2449.423 kb on - strand, within BNILDI_12200at 2449.624 kb on + strand, within xseAat 2449.963 kb on + strand, within xseAat 2450.043 kb on - strand, within xseAat 2450.337 kb on + strand, within xseAat 2450.386 kb on + strand, within xseAat 2450.386 kb on + strand, within xseAat 2450.386 kb on + strand, within xseAat 2450.386 kb on + strand, within xseAat 2450.460 kb on + strand, within xseAat 2450.461 kb on - strand, within xseAat 2450.461 kb on - strand, within xseA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,449,199 - +0.1
2,449,212 + +0.4
2,449,233 + -3.6
2,449,241 + +0.1
2,449,241 + -0.1
2,449,268 + +0.1
2,449,269 - -0.2
2,449,422 + BNILDI_12200 0.71 -2.0
2,449,423 - BNILDI_12200 0.71 +0.1
2,449,423 - BNILDI_12200 0.71 -0.4
2,449,423 - BNILDI_12200 0.71 -0.6
2,449,624 + xseA BNILDI_12205 0.10 +0.3
2,449,963 + xseA BNILDI_12205 0.35 -0.3
2,450,043 - xseA BNILDI_12205 0.41 +0.0
2,450,337 + xseA BNILDI_12205 0.62 -0.1
2,450,386 + xseA BNILDI_12205 0.66 -2.7
2,450,386 + xseA BNILDI_12205 0.66 -1.2
2,450,386 + xseA BNILDI_12205 0.66 -1.4
2,450,386 + xseA BNILDI_12205 0.66 +0.3
2,450,460 + xseA BNILDI_12205 0.71 -1.2
2,450,461 - xseA BNILDI_12205 0.71 +1.7
2,450,461 - xseA BNILDI_12205 0.71 -0.2

Or see this region's nucleotide sequence