Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nadK and grpE are separated by 122 nucleotides grpE and BNILDI_11635 are separated by 34 nucleotides BNILDI_11635 and yfjD are separated by 122 nucleotides
BNILDI_11625: nadK - NAD(+) kinase, at 2,333,460 to 2,334,338
nadK
BNILDI_11630: grpE - nucleotide exchange factor GrpE, at 2,334,461 to 2,335,051
grpE
BNILDI_11635: BNILDI_11635 - Cytoplasmic protein, at 2,335,086 to 2,335,691
_11635
BNILDI_11640: yfjD - UPF0053 inner membrane protein YfjD, at 2,335,814 to 2,337,055
yfjD
Position (kb)
2335
2336 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2335.035 kb on + strand at 2335.049 kb on + strand at 2335.053 kb on + strand at 2335.144 kb on + strand at 2335.172 kb on + strand, within BNILDI_11635 at 2335.174 kb on + strand, within BNILDI_11635 at 2335.174 kb on + strand, within BNILDI_11635 at 2335.175 kb on - strand, within BNILDI_11635 at 2335.308 kb on + strand, within BNILDI_11635 at 2335.345 kb on - strand, within BNILDI_11635 at 2335.438 kb on - strand, within BNILDI_11635 at 2335.679 kb on - strand at 2335.731 kb on + strand at 2335.731 kb on + strand at 2335.732 kb on - strand at 2335.744 kb on - strand at 2335.874 kb on - strand at 2335.894 kb on + strand at 2335.894 kb on + strand at 2335.895 kb on - strand at 2335.898 kb on + strand at 2335.898 kb on + strand at 2335.898 kb on + strand at 2335.898 kb on + strand at 2335.899 kb on - strand at 2335.899 kb on - strand at 2335.997 kb on + strand, within yfjD at 2335.998 kb on - strand, within yfjD at 2336.110 kb on + strand, within yfjD at 2336.141 kb on - strand, within yfjD at 2336.176 kb on - strand, within yfjD at 2336.263 kb on - strand, within yfjD at 2336.350 kb on + strand, within yfjD at 2336.351 kb on - strand, within yfjD at 2336.351 kb on - strand, within yfjD at 2336.351 kb on - strand, within yfjD at 2336.527 kb on + strand, within yfjD at 2336.648 kb on - strand, within yfjD
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,335,035 + -0.1 2,335,049 + -0.3 2,335,053 + -0.7 2,335,144 + -0.8 2,335,172 + BNILDI_11635 0.14 -0.3 2,335,174 + BNILDI_11635 0.15 -0.4 2,335,174 + BNILDI_11635 0.15 +0.1 2,335,175 - BNILDI_11635 0.15 +0.8 2,335,308 + BNILDI_11635 0.37 +3.0 2,335,345 - BNILDI_11635 0.43 -1.3 2,335,438 - BNILDI_11635 0.58 -0.7 2,335,679 - +1.3 2,335,731 + +0.1 2,335,731 + -2.0 2,335,732 - -0.1 2,335,744 - +0.3 2,335,874 - -2.2 2,335,894 + -1.9 2,335,894 + -0.0 2,335,895 - -1.5 2,335,898 + +0.1 2,335,898 + -0.3 2,335,898 + +0.8 2,335,898 + -0.0 2,335,899 - -0.3 2,335,899 - -0.6 2,335,997 + yfjD BNILDI_11640 0.15 +0.7 2,335,998 - yfjD BNILDI_11640 0.15 +1.9 2,336,110 + yfjD BNILDI_11640 0.24 +0.5 2,336,141 - yfjD BNILDI_11640 0.26 -0.8 2,336,176 - yfjD BNILDI_11640 0.29 -0.1 2,336,263 - yfjD BNILDI_11640 0.36 +1.4 2,336,350 + yfjD BNILDI_11640 0.43 +0.3 2,336,351 - yfjD BNILDI_11640 0.43 +0.3 2,336,351 - yfjD BNILDI_11640 0.43 +1.6 2,336,351 - yfjD BNILDI_11640 0.43 +0.1 2,336,527 + yfjD BNILDI_11640 0.57 -0.4 2,336,648 - yfjD BNILDI_11640 0.67 +0.8
Or see this region's nucleotide sequence