Strain Fitness in Escherichia coli ECRC62 around BNILDI_11635

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnadK and grpE are separated by 122 nucleotidesgrpE and BNILDI_11635 are separated by 34 nucleotidesBNILDI_11635 and yfjD are separated by 122 nucleotides BNILDI_11625: nadK - NAD(+) kinase, at 2,333,460 to 2,334,338 nadK BNILDI_11630: grpE - nucleotide exchange factor GrpE, at 2,334,461 to 2,335,051 grpE BNILDI_11635: BNILDI_11635 - Cytoplasmic protein, at 2,335,086 to 2,335,691 _11635 BNILDI_11640: yfjD - UPF0053 inner membrane protein YfjD, at 2,335,814 to 2,337,055 yfjD Position (kb) 2335 2336Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2335.035 kb on + strandat 2335.049 kb on + strandat 2335.053 kb on + strandat 2335.144 kb on + strandat 2335.172 kb on + strand, within BNILDI_11635at 2335.174 kb on + strand, within BNILDI_11635at 2335.174 kb on + strand, within BNILDI_11635at 2335.175 kb on - strand, within BNILDI_11635at 2335.308 kb on + strand, within BNILDI_11635at 2335.345 kb on - strand, within BNILDI_11635at 2335.438 kb on - strand, within BNILDI_11635at 2335.679 kb on - strandat 2335.731 kb on + strandat 2335.731 kb on + strandat 2335.732 kb on - strandat 2335.744 kb on - strandat 2335.874 kb on - strandat 2335.894 kb on + strandat 2335.894 kb on + strandat 2335.895 kb on - strandat 2335.898 kb on + strandat 2335.898 kb on + strandat 2335.898 kb on + strandat 2335.898 kb on + strandat 2335.899 kb on - strandat 2335.899 kb on - strandat 2335.997 kb on + strand, within yfjDat 2335.998 kb on - strand, within yfjDat 2336.110 kb on + strand, within yfjDat 2336.141 kb on - strand, within yfjDat 2336.176 kb on - strand, within yfjDat 2336.263 kb on - strand, within yfjDat 2336.350 kb on + strand, within yfjDat 2336.351 kb on - strand, within yfjDat 2336.351 kb on - strand, within yfjDat 2336.351 kb on - strand, within yfjDat 2336.527 kb on + strand, within yfjDat 2336.648 kb on - strand, within yfjD

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,335,035 + -0.1
2,335,049 + -0.3
2,335,053 + -0.7
2,335,144 + -0.8
2,335,172 + BNILDI_11635 0.14 -0.3
2,335,174 + BNILDI_11635 0.15 -0.4
2,335,174 + BNILDI_11635 0.15 +0.1
2,335,175 - BNILDI_11635 0.15 +0.8
2,335,308 + BNILDI_11635 0.37 +3.0
2,335,345 - BNILDI_11635 0.43 -1.3
2,335,438 - BNILDI_11635 0.58 -0.7
2,335,679 - +1.3
2,335,731 + +0.1
2,335,731 + -2.0
2,335,732 - -0.1
2,335,744 - +0.3
2,335,874 - -2.2
2,335,894 + -1.9
2,335,894 + -0.0
2,335,895 - -1.5
2,335,898 + +0.1
2,335,898 + -0.3
2,335,898 + +0.8
2,335,898 + -0.0
2,335,899 - -0.3
2,335,899 - -0.6
2,335,997 + yfjD BNILDI_11640 0.15 +0.7
2,335,998 - yfjD BNILDI_11640 0.15 +1.9
2,336,110 + yfjD BNILDI_11640 0.24 +0.5
2,336,141 - yfjD BNILDI_11640 0.26 -0.8
2,336,176 - yfjD BNILDI_11640 0.29 -0.1
2,336,263 - yfjD BNILDI_11640 0.36 +1.4
2,336,350 + yfjD BNILDI_11640 0.43 +0.3
2,336,351 - yfjD BNILDI_11640 0.43 +0.3
2,336,351 - yfjD BNILDI_11640 0.43 +1.6
2,336,351 - yfjD BNILDI_11640 0.43 +0.1
2,336,527 + yfjD BNILDI_11640 0.57 -0.4
2,336,648 - yfjD BNILDI_11640 0.67 +0.8

Or see this region's nucleotide sequence