Strain Fitness in Escherichia coli ECRC62 around BNILDI_11265

Experiment: D-Glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntstpA and ygaP are separated by 46 nucleotidesygaP and ygaV are separated by 9 nucleotidesygaV and yqaE are separated by 182 nucleotidesyqaE and kbp are separated by 83 nucleotides BNILDI_11260: stpA - DNA-binding protein StpA, at 2,269,212 to 2,269,616 stpA BNILDI_11265: ygaP - thiosulfate sulfurtransferase YgaP, at 2,269,663 to 2,270,187 ygaP BNILDI_11270: ygaV - putative HTH-type transcriptional regulator YgaV, at 2,270,197 to 2,270,496 ygaV BNILDI_11275: yqaE - UPF0057 membrane protein YqaE, at 2,270,679 to 2,270,837 yqaE BNILDI_11280: kbp - potassium binding protein Kbp, at 2,270,921 to 2,271,370 kbp Position (kb) 2269 2270 2271Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2268.721 kb on + strandat 2268.822 kb on - strandat 2268.830 kb on - strandat 2268.830 kb on - strandat 2268.850 kb on - strandat 2268.901 kb on - strandat 2269.026 kb on + strandat 2269.122 kb on - strandat 2269.445 kb on + strand, within stpAat 2269.618 kb on + strandat 2269.619 kb on - strandat 2269.689 kb on + strandat 2269.694 kb on - strandat 2270.008 kb on - strand, within ygaPat 2270.207 kb on + strandat 2270.207 kb on + strandat 2270.263 kb on + strand, within ygaVat 2270.264 kb on - strand, within ygaVat 2270.425 kb on - strand, within ygaVat 2270.447 kb on - strand, within ygaVat 2270.477 kb on - strandat 2270.477 kb on - strandat 2270.531 kb on + strandat 2270.549 kb on + strandat 2270.550 kb on - strandat 2270.552 kb on - strandat 2270.765 kb on + strand, within yqaEat 2270.766 kb on - strand, within yqaEat 2270.766 kb on - strand, within yqaEat 2270.768 kb on + strand, within yqaEat 2270.769 kb on - strand, within yqaEat 2270.791 kb on - strand, within yqaEat 2270.921 kb on - strandat 2270.921 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
remove
2,268,721 + +0.5
2,268,822 - -0.5
2,268,830 - -1.5
2,268,830 - +0.1
2,268,850 - -0.2
2,268,901 - -1.1
2,269,026 + +1.1
2,269,122 - +0.6
2,269,445 + stpA BNILDI_11260 0.58 +0.4
2,269,618 + -0.3
2,269,619 - -0.5
2,269,689 + +0.1
2,269,694 - -2.4
2,270,008 - ygaP BNILDI_11265 0.66 -2.1
2,270,207 + -0.3
2,270,207 + -0.0
2,270,263 + ygaV BNILDI_11270 0.22 -0.3
2,270,264 - ygaV BNILDI_11270 0.22 +0.8
2,270,425 - ygaV BNILDI_11270 0.76 +0.1
2,270,447 - ygaV BNILDI_11270 0.83 -2.4
2,270,477 - -0.4
2,270,477 - +1.8
2,270,531 + -0.4
2,270,549 + -0.0
2,270,550 - -0.1
2,270,552 - -0.1
2,270,765 + yqaE BNILDI_11275 0.54 -2.1
2,270,766 - yqaE BNILDI_11275 0.55 -2.8
2,270,766 - yqaE BNILDI_11275 0.55 +0.0
2,270,768 + yqaE BNILDI_11275 0.56 +0.7
2,270,769 - yqaE BNILDI_11275 0.57 -3.8
2,270,791 - yqaE BNILDI_11275 0.70 -0.6
2,270,921 - +0.2
2,270,921 - -0.3

Or see this region's nucleotide sequence