Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt argA and amiC are separated by 231 nucleotides amiC and BNILDI_10435 are separated by 345 nucleotides
BNILDI_10425: argA - amino-acid N-acetyltransferase, at 2,105,347 to 2,106,678
argA
BNILDI_10430: amiC - N-acetylmuramoyl-L-alanine amidase AmiC, at 2,106,910 to 2,108,163
amiC
BNILDI_10435: BNILDI_10435 - type VI secretion system protein VasL, at 2,108,509 to 2,109,945
_10435
Position (kb)
2106
2107
2108
2109 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2106.019 kb on - strand, within argA at 2106.170 kb on - strand, within argA at 2106.327 kb on + strand, within argA at 2106.421 kb on + strand, within argA at 2106.421 kb on + strand, within argA at 2106.421 kb on + strand, within argA at 2106.424 kb on - strand, within argA at 2106.424 kb on - strand, within argA at 2106.435 kb on - strand, within argA at 2106.624 kb on - strand at 2106.781 kb on - strand at 2106.885 kb on + strand at 2106.886 kb on - strand at 2106.886 kb on - strand at 2107.087 kb on + strand, within amiC at 2107.088 kb on - strand, within amiC at 2107.089 kb on + strand, within amiC at 2107.089 kb on + strand, within amiC at 2107.142 kb on + strand, within amiC at 2107.241 kb on + strand, within amiC at 2107.259 kb on + strand, within amiC at 2107.272 kb on - strand, within amiC at 2107.311 kb on + strand, within amiC at 2107.390 kb on + strand, within amiC at 2107.390 kb on + strand, within amiC at 2107.529 kb on - strand, within amiC at 2107.562 kb on + strand, within amiC at 2107.563 kb on - strand, within amiC at 2107.563 kb on - strand, within amiC at 2107.563 kb on - strand, within amiC at 2107.602 kb on + strand, within amiC at 2107.602 kb on + strand, within amiC at 2107.612 kb on + strand, within amiC at 2107.613 kb on - strand, within amiC at 2107.776 kb on + strand, within amiC at 2107.880 kb on + strand, within amiC at 2107.880 kb on + strand, within amiC at 2107.881 kb on - strand, within amiC at 2107.881 kb on - strand, within amiC at 2108.007 kb on + strand, within amiC at 2108.103 kb on + strand at 2108.126 kb on - strand at 2108.545 kb on + strand at 2108.545 kb on + strand at 2108.613 kb on + strand at 2108.614 kb on - strand at 2108.700 kb on - strand, within BNILDI_10435 at 2108.716 kb on - strand, within BNILDI_10435 at 2108.768 kb on - strand, within BNILDI_10435 at 2108.963 kb on - strand, within BNILDI_10435 at 2109.152 kb on - strand, within BNILDI_10435
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 2,106,019 - argA BNILDI_10425 0.50 -3.5 2,106,170 - argA BNILDI_10425 0.62 +0.4 2,106,327 + argA BNILDI_10425 0.74 -3.6 2,106,421 + argA BNILDI_10425 0.81 -2.1 2,106,421 + argA BNILDI_10425 0.81 -2.2 2,106,421 + argA BNILDI_10425 0.81 -3.3 2,106,424 - argA BNILDI_10425 0.81 -2.5 2,106,424 - argA BNILDI_10425 0.81 -3.2 2,106,435 - argA BNILDI_10425 0.82 -2.4 2,106,624 - -2.9 2,106,781 - -1.0 2,106,885 + -1.1 2,106,886 - +0.3 2,106,886 - +0.2 2,107,087 + amiC BNILDI_10430 0.14 -1.7 2,107,088 - amiC BNILDI_10430 0.14 -0.1 2,107,089 + amiC BNILDI_10430 0.14 -0.5 2,107,089 + amiC BNILDI_10430 0.14 +0.2 2,107,142 + amiC BNILDI_10430 0.19 -0.3 2,107,241 + amiC BNILDI_10430 0.26 -0.1 2,107,259 + amiC BNILDI_10430 0.28 -0.5 2,107,272 - amiC BNILDI_10430 0.29 +1.0 2,107,311 + amiC BNILDI_10430 0.32 +0.1 2,107,390 + amiC BNILDI_10430 0.38 -0.4 2,107,390 + amiC BNILDI_10430 0.38 -0.1 2,107,529 - amiC BNILDI_10430 0.49 -0.2 2,107,562 + amiC BNILDI_10430 0.52 +0.4 2,107,563 - amiC BNILDI_10430 0.52 -0.7 2,107,563 - amiC BNILDI_10430 0.52 -0.9 2,107,563 - amiC BNILDI_10430 0.52 -0.2 2,107,602 + amiC BNILDI_10430 0.55 -0.4 2,107,602 + amiC BNILDI_10430 0.55 +0.1 2,107,612 + amiC BNILDI_10430 0.56 -0.0 2,107,613 - amiC BNILDI_10430 0.56 +0.5 2,107,776 + amiC BNILDI_10430 0.69 -1.1 2,107,880 + amiC BNILDI_10430 0.77 +0.7 2,107,880 + amiC BNILDI_10430 0.77 +1.7 2,107,881 - amiC BNILDI_10430 0.77 -0.8 2,107,881 - amiC BNILDI_10430 0.77 -1.8 2,108,007 + amiC BNILDI_10430 0.87 +0.5 2,108,103 + +0.4 2,108,126 - +0.2 2,108,545 + +0.1 2,108,545 + +0.7 2,108,613 + +0.8 2,108,614 - +0.1 2,108,700 - BNILDI_10435 0.13 -0.9 2,108,716 - BNILDI_10435 0.14 +0.0 2,108,768 - BNILDI_10435 0.18 -0.2 2,108,963 - BNILDI_10435 0.32 -1.1 2,109,152 - BNILDI_10435 0.45 -0.4
Or see this region's nucleotide sequence