Strain Fitness in Escherichia coli ECRC62 around BNILDI_10430

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntargA and amiC are separated by 231 nucleotidesamiC and BNILDI_10435 are separated by 345 nucleotides BNILDI_10425: argA - amino-acid N-acetyltransferase, at 2,105,347 to 2,106,678 argA BNILDI_10430: amiC - N-acetylmuramoyl-L-alanine amidase AmiC, at 2,106,910 to 2,108,163 amiC BNILDI_10435: BNILDI_10435 - type VI secretion system protein VasL, at 2,108,509 to 2,109,945 _10435 Position (kb) 2106 2107 2108 2109Strain fitness (log2 ratio) -3 -2 -1 0 1at 2106.019 kb on - strand, within argAat 2106.170 kb on - strand, within argAat 2106.327 kb on + strand, within argAat 2106.421 kb on + strand, within argAat 2106.421 kb on + strand, within argAat 2106.421 kb on + strand, within argAat 2106.424 kb on - strand, within argAat 2106.424 kb on - strand, within argAat 2106.435 kb on - strand, within argAat 2106.624 kb on - strandat 2106.781 kb on - strandat 2106.885 kb on + strandat 2106.886 kb on - strandat 2106.886 kb on - strandat 2107.087 kb on + strand, within amiCat 2107.088 kb on - strand, within amiCat 2107.089 kb on + strand, within amiCat 2107.089 kb on + strand, within amiCat 2107.142 kb on + strand, within amiCat 2107.241 kb on + strand, within amiCat 2107.259 kb on + strand, within amiCat 2107.272 kb on - strand, within amiCat 2107.311 kb on + strand, within amiCat 2107.390 kb on + strand, within amiCat 2107.390 kb on + strand, within amiCat 2107.529 kb on - strand, within amiCat 2107.562 kb on + strand, within amiCat 2107.563 kb on - strand, within amiCat 2107.563 kb on - strand, within amiCat 2107.563 kb on - strand, within amiCat 2107.602 kb on + strand, within amiCat 2107.602 kb on + strand, within amiCat 2107.612 kb on + strand, within amiCat 2107.613 kb on - strand, within amiCat 2107.776 kb on + strand, within amiCat 2107.880 kb on + strand, within amiCat 2107.880 kb on + strand, within amiCat 2107.881 kb on - strand, within amiCat 2107.881 kb on - strand, within amiCat 2108.007 kb on + strand, within amiCat 2108.103 kb on + strandat 2108.126 kb on - strandat 2108.545 kb on + strandat 2108.545 kb on + strandat 2108.613 kb on + strandat 2108.614 kb on - strandat 2108.700 kb on - strand, within BNILDI_10435at 2108.716 kb on - strand, within BNILDI_10435at 2108.768 kb on - strand, within BNILDI_10435at 2108.963 kb on - strand, within BNILDI_10435at 2109.152 kb on - strand, within BNILDI_10435

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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2,106,019 - argA BNILDI_10425 0.50 -3.5
2,106,170 - argA BNILDI_10425 0.62 +0.4
2,106,327 + argA BNILDI_10425 0.74 -3.6
2,106,421 + argA BNILDI_10425 0.81 -2.1
2,106,421 + argA BNILDI_10425 0.81 -2.2
2,106,421 + argA BNILDI_10425 0.81 -3.3
2,106,424 - argA BNILDI_10425 0.81 -2.5
2,106,424 - argA BNILDI_10425 0.81 -3.2
2,106,435 - argA BNILDI_10425 0.82 -2.4
2,106,624 - -2.9
2,106,781 - -1.0
2,106,885 + -1.1
2,106,886 - +0.3
2,106,886 - +0.2
2,107,087 + amiC BNILDI_10430 0.14 -1.7
2,107,088 - amiC BNILDI_10430 0.14 -0.1
2,107,089 + amiC BNILDI_10430 0.14 -0.5
2,107,089 + amiC BNILDI_10430 0.14 +0.2
2,107,142 + amiC BNILDI_10430 0.19 -0.3
2,107,241 + amiC BNILDI_10430 0.26 -0.1
2,107,259 + amiC BNILDI_10430 0.28 -0.5
2,107,272 - amiC BNILDI_10430 0.29 +1.0
2,107,311 + amiC BNILDI_10430 0.32 +0.1
2,107,390 + amiC BNILDI_10430 0.38 -0.4
2,107,390 + amiC BNILDI_10430 0.38 -0.1
2,107,529 - amiC BNILDI_10430 0.49 -0.2
2,107,562 + amiC BNILDI_10430 0.52 +0.4
2,107,563 - amiC BNILDI_10430 0.52 -0.7
2,107,563 - amiC BNILDI_10430 0.52 -0.9
2,107,563 - amiC BNILDI_10430 0.52 -0.2
2,107,602 + amiC BNILDI_10430 0.55 -0.4
2,107,602 + amiC BNILDI_10430 0.55 +0.1
2,107,612 + amiC BNILDI_10430 0.56 -0.0
2,107,613 - amiC BNILDI_10430 0.56 +0.5
2,107,776 + amiC BNILDI_10430 0.69 -1.1
2,107,880 + amiC BNILDI_10430 0.77 +0.7
2,107,880 + amiC BNILDI_10430 0.77 +1.7
2,107,881 - amiC BNILDI_10430 0.77 -0.8
2,107,881 - amiC BNILDI_10430 0.77 -1.8
2,108,007 + amiC BNILDI_10430 0.87 +0.5
2,108,103 + +0.4
2,108,126 - +0.2
2,108,545 + +0.1
2,108,545 + +0.7
2,108,613 + +0.8
2,108,614 - +0.1
2,108,700 - BNILDI_10435 0.13 -0.9
2,108,716 - BNILDI_10435 0.14 +0.0
2,108,768 - BNILDI_10435 0.18 -0.2
2,108,963 - BNILDI_10435 0.32 -1.1
2,109,152 - BNILDI_10435 0.45 -0.4

Or see this region's nucleotide sequence