Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yprA and uvrD overlap by 4 nucleotides uvrD and tnp-IS1 are separated by 195 nucleotides tnp-IS1 and insB are separated by 128 nucleotides insB and BNILDI_09575 are separated by 89 nucleotides
BNILDI_09555: yprA - DEAD/DEAH box helicase, at 1,920,664 to 1,927,005
yprA
BNILDI_09560: uvrD - DNA helicase, at 1,927,002 to 1,929,116
uvrD
BNILDI_09565: tnp-IS1 - IS1 family transposase, at 1,929,312 to 1,929,587
tnp-IS1
BNILDI_09570: insB - Transposase and inactivated derivatives, IS1 family, at 1,929,716 to 1,930,009
insB
BNILDI_09575: BNILDI_09575 - hypothetical protein, at 1,930,099 to 1,930,944
_09575
Position (kb) 1927
1928
1929
1930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1926.087 kb on + strand, within yprA at 1926.141 kb on + strand, within yprA at 1926.149 kb on - strand, within yprA at 1926.260 kb on + strand, within yprA at 1926.340 kb on + strand, within yprA at 1926.346 kb on + strand, within yprA at 1926.347 kb on - strand, within yprA at 1926.347 kb on - strand, within yprA at 1926.429 kb on + strand at 1926.436 kb on - strand at 1926.453 kb on + strand at 1926.453 kb on + strand at 1926.537 kb on + strand at 1926.538 kb on - strand at 1926.557 kb on - strand at 1926.609 kb on - strand at 1926.666 kb on - strand at 1926.915 kb on + strand at 1926.973 kb on - strand at 1926.973 kb on - strand at 1927.136 kb on + strand at 1927.136 kb on + strand at 1927.136 kb on + strand at 1927.136 kb on + strand at 1927.137 kb on - strand at 1927.137 kb on - strand at 1927.137 kb on - strand at 1927.239 kb on + strand, within uvrD at 1927.239 kb on + strand, within uvrD at 1927.239 kb on + strand, within uvrD at 1927.240 kb on - strand, within uvrD at 1927.240 kb on - strand, within uvrD at 1927.240 kb on - strand, within uvrD at 1927.240 kb on - strand, within uvrD at 1927.240 kb on - strand, within uvrD at 1927.240 kb on - strand, within uvrD at 1927.275 kb on + strand, within uvrD at 1927.276 kb on - strand, within uvrD at 1927.340 kb on + strand, within uvrD at 1927.343 kb on + strand, within uvrD at 1927.343 kb on + strand, within uvrD at 1927.343 kb on + strand, within uvrD at 1927.344 kb on - strand, within uvrD at 1927.347 kb on + strand, within uvrD at 1927.347 kb on + strand, within uvrD at 1927.348 kb on - strand, within uvrD at 1927.348 kb on - strand, within uvrD at 1927.348 kb on - strand, within uvrD at 1927.348 kb on - strand, within uvrD at 1927.502 kb on - strand, within uvrD at 1927.502 kb on - strand, within uvrD at 1927.637 kb on + strand, within uvrD at 1927.774 kb on + strand, within uvrD at 1927.884 kb on - strand, within uvrD at 1927.904 kb on + strand, within uvrD at 1927.905 kb on - strand, within uvrD at 1927.931 kb on + strand, within uvrD at 1927.965 kb on - strand, within uvrD at 1928.007 kb on + strand, within uvrD at 1928.024 kb on - strand, within uvrD at 1928.025 kb on + strand, within uvrD at 1928.026 kb on - strand, within uvrD at 1928.026 kb on - strand, within uvrD at 1928.061 kb on + strand, within uvrD at 1928.061 kb on + strand, within uvrD at 1928.062 kb on - strand, within uvrD at 1928.109 kb on + strand, within uvrD at 1928.109 kb on + strand, within uvrD at 1928.195 kb on + strand, within uvrD at 1928.195 kb on + strand, within uvrD at 1928.196 kb on - strand, within uvrD at 1928.343 kb on + strand, within uvrD at 1928.343 kb on + strand, within uvrD at 1928.343 kb on + strand, within uvrD at 1928.343 kb on + strand, within uvrD at 1928.345 kb on + strand, within uvrD at 1928.345 kb on + strand, within uvrD at 1928.393 kb on + strand, within uvrD at 1928.394 kb on - strand, within uvrD at 1928.462 kb on + strand, within uvrD at 1928.462 kb on + strand, within uvrD at 1928.463 kb on - strand, within uvrD at 1928.463 kb on - strand, within uvrD at 1928.475 kb on - strand, within uvrD at 1928.499 kb on - strand, within uvrD at 1928.501 kb on + strand, within uvrD at 1928.537 kb on + strand, within uvrD at 1928.637 kb on + strand, within uvrD at 1928.637 kb on + strand, within uvrD at 1928.638 kb on - strand, within uvrD at 1928.760 kb on - strand, within uvrD at 1928.837 kb on + strand, within uvrD at 1928.925 kb on + strand at 1928.925 kb on + strand at 1928.925 kb on + strand at 1929.013 kb on + strand at 1929.120 kb on + strand at 1929.120 kb on + strand at 1929.120 kb on + strand at 1929.120 kb on + strand at 1929.121 kb on - strand at 1929.159 kb on + strand at 1929.159 kb on + strand at 1929.159 kb on + strand at 1929.161 kb on + strand at 1929.162 kb on - strand at 1929.162 kb on - strand at 1929.162 kb on - strand at 1929.189 kb on + strand at 1929.191 kb on + strand at 1929.199 kb on - strand at 1929.219 kb on + strand at 1929.235 kb on - strand at 1929.236 kb on + strand at 1929.287 kb on - strand at 1929.287 kb on - strand at 1930.007 kb on + strand at 1930.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,926,087 + yprA BNILDI_09555 0.86 -0.9 1,926,141 + yprA BNILDI_09555 0.86 +1.4 1,926,149 - yprA BNILDI_09555 0.86 +0.2 1,926,260 + yprA BNILDI_09555 0.88 +0.9 1,926,340 + yprA BNILDI_09555 0.89 -0.2 1,926,346 + yprA BNILDI_09555 0.90 +0.2 1,926,347 - yprA BNILDI_09555 0.90 +1.0 1,926,347 - yprA BNILDI_09555 0.90 -0.1 1,926,429 + +0.6 1,926,436 - +0.0 1,926,453 + +0.0 1,926,453 + +1.8 1,926,537 + -0.1 1,926,538 - +1.5 1,926,557 - +0.6 1,926,609 - +0.2 1,926,666 - +0.6 1,926,915 + +0.9 1,926,973 - +0.8 1,926,973 - +0.3 1,927,136 + -1.9 1,927,136 + +0.7 1,927,136 + +1.1 1,927,136 + -0.5 1,927,137 - +0.1 1,927,137 - -0.2 1,927,137 - +0.4 1,927,239 + uvrD BNILDI_09560 0.11 -0.3 1,927,239 + uvrD BNILDI_09560 0.11 -0.7 1,927,239 + uvrD BNILDI_09560 0.11 +0.5 1,927,240 - uvrD BNILDI_09560 0.11 -0.0 1,927,240 - uvrD BNILDI_09560 0.11 +0.1 1,927,240 - uvrD BNILDI_09560 0.11 +0.9 1,927,240 - uvrD BNILDI_09560 0.11 +0.4 1,927,240 - uvrD BNILDI_09560 0.11 +0.3 1,927,240 - uvrD BNILDI_09560 0.11 +2.1 1,927,275 + uvrD BNILDI_09560 0.13 -1.6 1,927,276 - uvrD BNILDI_09560 0.13 +0.0 1,927,340 + uvrD BNILDI_09560 0.16 -0.3 1,927,343 + uvrD BNILDI_09560 0.16 -1.1 1,927,343 + uvrD BNILDI_09560 0.16 -1.7 1,927,343 + uvrD BNILDI_09560 0.16 -0.7 1,927,344 - uvrD BNILDI_09560 0.16 -0.8 1,927,347 + uvrD BNILDI_09560 0.16 +1.0 1,927,347 + uvrD BNILDI_09560 0.16 -0.7 1,927,348 - uvrD BNILDI_09560 0.16 -1.6 1,927,348 - uvrD BNILDI_09560 0.16 -1.0 1,927,348 - uvrD BNILDI_09560 0.16 -0.2 1,927,348 - uvrD BNILDI_09560 0.16 -0.6 1,927,502 - uvrD BNILDI_09560 0.24 +0.6 1,927,502 - uvrD BNILDI_09560 0.24 -3.1 1,927,637 + uvrD BNILDI_09560 0.30 +0.3 1,927,774 + uvrD BNILDI_09560 0.37 -0.1 1,927,884 - uvrD BNILDI_09560 0.42 -1.5 1,927,904 + uvrD BNILDI_09560 0.43 -1.0 1,927,905 - uvrD BNILDI_09560 0.43 -0.7 1,927,931 + uvrD BNILDI_09560 0.44 -0.1 1,927,965 - uvrD BNILDI_09560 0.46 +0.7 1,928,007 + uvrD BNILDI_09560 0.48 +0.3 1,928,024 - uvrD BNILDI_09560 0.48 -1.7 1,928,025 + uvrD BNILDI_09560 0.48 -0.4 1,928,026 - uvrD BNILDI_09560 0.48 -0.7 1,928,026 - uvrD BNILDI_09560 0.48 -0.1 1,928,061 + uvrD BNILDI_09560 0.50 -0.4 1,928,061 + uvrD BNILDI_09560 0.50 +0.5 1,928,062 - uvrD BNILDI_09560 0.50 -0.7 1,928,109 + uvrD BNILDI_09560 0.52 +0.6 1,928,109 + uvrD BNILDI_09560 0.52 +0.5 1,928,195 + uvrD BNILDI_09560 0.56 -0.4 1,928,195 + uvrD BNILDI_09560 0.56 -0.1 1,928,196 - uvrD BNILDI_09560 0.56 -0.5 1,928,343 + uvrD BNILDI_09560 0.63 -2.5 1,928,343 + uvrD BNILDI_09560 0.63 +0.3 1,928,343 + uvrD BNILDI_09560 0.63 +0.3 1,928,343 + uvrD BNILDI_09560 0.63 +0.6 1,928,345 + uvrD BNILDI_09560 0.63 -0.1 1,928,345 + uvrD BNILDI_09560 0.63 +0.1 1,928,393 + uvrD BNILDI_09560 0.66 +0.1 1,928,394 - uvrD BNILDI_09560 0.66 +0.8 1,928,462 + uvrD BNILDI_09560 0.69 -1.4 1,928,462 + uvrD BNILDI_09560 0.69 +0.6 1,928,463 - uvrD BNILDI_09560 0.69 +0.3 1,928,463 - uvrD BNILDI_09560 0.69 +0.4 1,928,475 - uvrD BNILDI_09560 0.70 -0.4 1,928,499 - uvrD BNILDI_09560 0.71 -1.0 1,928,501 + uvrD BNILDI_09560 0.71 -0.2 1,928,537 + uvrD BNILDI_09560 0.73 -0.7 1,928,637 + uvrD BNILDI_09560 0.77 +0.3 1,928,637 + uvrD BNILDI_09560 0.77 -0.0 1,928,638 - uvrD BNILDI_09560 0.77 +0.2 1,928,760 - uvrD BNILDI_09560 0.83 +0.4 1,928,837 + uvrD BNILDI_09560 0.87 -0.1 1,928,925 + +0.0 1,928,925 + -0.1 1,928,925 + -0.1 1,929,013 + -0.2 1,929,120 + +1.5 1,929,120 + -0.2 1,929,120 + -0.2 1,929,120 + -1.8 1,929,121 - -1.4 1,929,159 + -0.9 1,929,159 + -0.3 1,929,159 + +0.0 1,929,161 + +0.4 1,929,162 - -0.2 1,929,162 - +0.2 1,929,162 - +1.7 1,929,189 + -0.5 1,929,191 + +0.5 1,929,199 - -2.4 1,929,219 + +0.8 1,929,235 - -0.0 1,929,236 + -0.4 1,929,287 - +0.1 1,929,287 - +0.3 1,930,007 + +0.7 1,930,038 - -1.0
Or see this region's nucleotide sequence