Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gcd and BNILDI_08820 are separated by 396 nucleotides BNILDI_08820 and BNILDI_08825 overlap by 4 nucleotides BNILDI_08825 and alpA are separated by 95 nucleotides
BNILDI_08815: gcd - quinoprotein glucose dehydrogenase, at 1,767,675 to 1,770,065
gcd
BNILDI_08820: BNILDI_08820 - integrase, at 1,770,462 to 1,771,685
_08820
BNILDI_08825: BNILDI_08825 - DUF6387 domain-containing protein, at 1,771,682 to 1,772,485
_08825
BNILDI_08830: alpA - transcriptional regulator, at 1,772,581 to 1,772,865
alpA
Position (kb)
1770
1771
1772 Strain fitness (log2 ratio)
-2
-1
0
1 at 1769.554 kb on + strand, within gcd at 1769.645 kb on + strand, within gcd at 1769.985 kb on + strand at 1769.989 kb on + strand at 1769.989 kb on + strand at 1769.989 kb on + strand at 1769.990 kb on - strand at 1770.033 kb on + strand at 1770.051 kb on - strand at 1770.056 kb on + strand at 1770.057 kb on - strand at 1770.057 kb on - strand at 1770.090 kb on - strand at 1770.154 kb on - strand at 1770.183 kb on - strand at 1770.188 kb on + strand at 1770.190 kb on + strand at 1770.191 kb on - strand at 1770.191 kb on - strand at 1770.461 kb on + strand at 1770.587 kb on + strand, within BNILDI_08820 at 1770.663 kb on - strand, within BNILDI_08820 at 1770.813 kb on + strand, within BNILDI_08820 at 1770.813 kb on + strand, within BNILDI_08820 at 1770.860 kb on - strand, within BNILDI_08820 at 1770.860 kb on - strand, within BNILDI_08820 at 1770.869 kb on + strand, within BNILDI_08820 at 1770.869 kb on + strand, within BNILDI_08820 at 1770.869 kb on + strand, within BNILDI_08820 at 1770.870 kb on - strand, within BNILDI_08820 at 1770.943 kb on + strand, within BNILDI_08820 at 1770.944 kb on - strand, within BNILDI_08820 at 1770.990 kb on - strand, within BNILDI_08820 at 1771.001 kb on - strand, within BNILDI_08820 at 1771.066 kb on + strand, within BNILDI_08820 at 1771.134 kb on - strand, within BNILDI_08820 at 1771.139 kb on + strand, within BNILDI_08820 at 1771.244 kb on + strand, within BNILDI_08820 at 1771.277 kb on + strand, within BNILDI_08820 at 1771.319 kb on + strand, within BNILDI_08820 at 1771.320 kb on - strand, within BNILDI_08820 at 1771.343 kb on - strand, within BNILDI_08820 at 1771.507 kb on + strand, within BNILDI_08820 at 1771.508 kb on - strand, within BNILDI_08820 at 1771.517 kb on + strand, within BNILDI_08820 at 1771.518 kb on - strand, within BNILDI_08820 at 1771.556 kb on + strand, within BNILDI_08820 at 1771.566 kb on + strand at 1771.567 kb on - strand at 1771.567 kb on - strand at 1771.582 kb on - strand at 1771.652 kb on + strand at 1771.912 kb on + strand, within BNILDI_08825 at 1772.413 kb on - strand at 1772.437 kb on + strand at 1772.440 kb on - strand at 1772.484 kb on - strand at 1772.548 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,769,554 + gcd BNILDI_08815 0.79 +0.2 1,769,645 + gcd BNILDI_08815 0.82 +1.4 1,769,985 + +0.1 1,769,989 + -0.2 1,769,989 + +0.0 1,769,989 + -1.4 1,769,990 - +1.4 1,770,033 + -0.6 1,770,051 - +0.5 1,770,056 + -1.5 1,770,057 - -2.1 1,770,057 - -1.6 1,770,090 - +1.6 1,770,154 - -1.9 1,770,183 - +0.1 1,770,188 + -0.7 1,770,190 + +0.2 1,770,191 - +0.1 1,770,191 - -0.3 1,770,461 + -1.6 1,770,587 + BNILDI_08820 0.10 -0.6 1,770,663 - BNILDI_08820 0.16 -0.1 1,770,813 + BNILDI_08820 0.29 -2.7 1,770,813 + BNILDI_08820 0.29 -0.4 1,770,860 - BNILDI_08820 0.33 +0.1 1,770,860 - BNILDI_08820 0.33 -1.9 1,770,869 + BNILDI_08820 0.33 -0.8 1,770,869 + BNILDI_08820 0.33 +0.4 1,770,869 + BNILDI_08820 0.33 +0.0 1,770,870 - BNILDI_08820 0.33 +0.2 1,770,943 + BNILDI_08820 0.39 -0.2 1,770,944 - BNILDI_08820 0.39 +0.0 1,770,990 - BNILDI_08820 0.43 -0.2 1,771,001 - BNILDI_08820 0.44 -0.1 1,771,066 + BNILDI_08820 0.49 +0.5 1,771,134 - BNILDI_08820 0.55 +0.6 1,771,139 + BNILDI_08820 0.55 -0.3 1,771,244 + BNILDI_08820 0.64 +0.2 1,771,277 + BNILDI_08820 0.67 -2.4 1,771,319 + BNILDI_08820 0.70 +0.5 1,771,320 - BNILDI_08820 0.70 +1.0 1,771,343 - BNILDI_08820 0.72 -1.2 1,771,507 + BNILDI_08820 0.85 +0.5 1,771,508 - BNILDI_08820 0.85 -0.2 1,771,517 + BNILDI_08820 0.86 +0.2 1,771,518 - BNILDI_08820 0.86 +0.0 1,771,556 + BNILDI_08820 0.89 +0.1 1,771,566 + -0.5 1,771,567 - +0.7 1,771,567 - +0.1 1,771,582 - -0.4 1,771,652 + +0.1 1,771,912 + BNILDI_08825 0.29 -0.5 1,772,413 - +0.5 1,772,437 + +0.1 1,772,440 - -1.1 1,772,484 - -0.1 1,772,548 - +1.1
Or see this region's nucleotide sequence