Strain Fitness in Escherichia coli ECRC62 around BNILDI_08820

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgcd and BNILDI_08820 are separated by 396 nucleotidesBNILDI_08820 and BNILDI_08825 overlap by 4 nucleotidesBNILDI_08825 and alpA are separated by 95 nucleotides BNILDI_08815: gcd - quinoprotein glucose dehydrogenase, at 1,767,675 to 1,770,065 gcd BNILDI_08820: BNILDI_08820 - integrase, at 1,770,462 to 1,771,685 _08820 BNILDI_08825: BNILDI_08825 - DUF6387 domain-containing protein, at 1,771,682 to 1,772,485 _08825 BNILDI_08830: alpA - transcriptional regulator, at 1,772,581 to 1,772,865 alpA Position (kb) 1770 1771 1772Strain fitness (log2 ratio) -2 -1 0 1at 1769.554 kb on + strand, within gcdat 1769.645 kb on + strand, within gcdat 1769.985 kb on + strandat 1769.989 kb on + strandat 1769.989 kb on + strandat 1769.989 kb on + strandat 1769.990 kb on - strandat 1770.033 kb on + strandat 1770.051 kb on - strandat 1770.056 kb on + strandat 1770.057 kb on - strandat 1770.057 kb on - strandat 1770.090 kb on - strandat 1770.154 kb on - strandat 1770.183 kb on - strandat 1770.188 kb on + strandat 1770.190 kb on + strandat 1770.191 kb on - strandat 1770.191 kb on - strandat 1770.461 kb on + strandat 1770.587 kb on + strand, within BNILDI_08820at 1770.663 kb on - strand, within BNILDI_08820at 1770.813 kb on + strand, within BNILDI_08820at 1770.813 kb on + strand, within BNILDI_08820at 1770.860 kb on - strand, within BNILDI_08820at 1770.860 kb on - strand, within BNILDI_08820at 1770.869 kb on + strand, within BNILDI_08820at 1770.869 kb on + strand, within BNILDI_08820at 1770.869 kb on + strand, within BNILDI_08820at 1770.870 kb on - strand, within BNILDI_08820at 1770.943 kb on + strand, within BNILDI_08820at 1770.944 kb on - strand, within BNILDI_08820at 1770.990 kb on - strand, within BNILDI_08820at 1771.001 kb on - strand, within BNILDI_08820at 1771.066 kb on + strand, within BNILDI_08820at 1771.134 kb on - strand, within BNILDI_08820at 1771.139 kb on + strand, within BNILDI_08820at 1771.244 kb on + strand, within BNILDI_08820at 1771.277 kb on + strand, within BNILDI_08820at 1771.319 kb on + strand, within BNILDI_08820at 1771.320 kb on - strand, within BNILDI_08820at 1771.343 kb on - strand, within BNILDI_08820at 1771.507 kb on + strand, within BNILDI_08820at 1771.508 kb on - strand, within BNILDI_08820at 1771.517 kb on + strand, within BNILDI_08820at 1771.518 kb on - strand, within BNILDI_08820at 1771.556 kb on + strand, within BNILDI_08820at 1771.566 kb on + strandat 1771.567 kb on - strandat 1771.567 kb on - strandat 1771.582 kb on - strandat 1771.652 kb on + strandat 1771.912 kb on + strand, within BNILDI_08825at 1772.413 kb on - strandat 1772.437 kb on + strandat 1772.440 kb on - strandat 1772.484 kb on - strandat 1772.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,769,554 + gcd BNILDI_08815 0.79 +0.2
1,769,645 + gcd BNILDI_08815 0.82 +1.4
1,769,985 + +0.1
1,769,989 + -0.2
1,769,989 + +0.0
1,769,989 + -1.4
1,769,990 - +1.4
1,770,033 + -0.6
1,770,051 - +0.5
1,770,056 + -1.5
1,770,057 - -2.1
1,770,057 - -1.6
1,770,090 - +1.6
1,770,154 - -1.9
1,770,183 - +0.1
1,770,188 + -0.7
1,770,190 + +0.2
1,770,191 - +0.1
1,770,191 - -0.3
1,770,461 + -1.6
1,770,587 + BNILDI_08820 0.10 -0.6
1,770,663 - BNILDI_08820 0.16 -0.1
1,770,813 + BNILDI_08820 0.29 -2.7
1,770,813 + BNILDI_08820 0.29 -0.4
1,770,860 - BNILDI_08820 0.33 +0.1
1,770,860 - BNILDI_08820 0.33 -1.9
1,770,869 + BNILDI_08820 0.33 -0.8
1,770,869 + BNILDI_08820 0.33 +0.4
1,770,869 + BNILDI_08820 0.33 +0.0
1,770,870 - BNILDI_08820 0.33 +0.2
1,770,943 + BNILDI_08820 0.39 -0.2
1,770,944 - BNILDI_08820 0.39 +0.0
1,770,990 - BNILDI_08820 0.43 -0.2
1,771,001 - BNILDI_08820 0.44 -0.1
1,771,066 + BNILDI_08820 0.49 +0.5
1,771,134 - BNILDI_08820 0.55 +0.6
1,771,139 + BNILDI_08820 0.55 -0.3
1,771,244 + BNILDI_08820 0.64 +0.2
1,771,277 + BNILDI_08820 0.67 -2.4
1,771,319 + BNILDI_08820 0.70 +0.5
1,771,320 - BNILDI_08820 0.70 +1.0
1,771,343 - BNILDI_08820 0.72 -1.2
1,771,507 + BNILDI_08820 0.85 +0.5
1,771,508 - BNILDI_08820 0.85 -0.2
1,771,517 + BNILDI_08820 0.86 +0.2
1,771,518 - BNILDI_08820 0.86 +0.0
1,771,556 + BNILDI_08820 0.89 +0.1
1,771,566 + -0.5
1,771,567 - +0.7
1,771,567 - +0.1
1,771,582 - -0.4
1,771,652 + +0.1
1,771,912 + BNILDI_08825 0.29 -0.5
1,772,413 - +0.5
1,772,437 + +0.1
1,772,440 - -1.1
1,772,484 - -0.1
1,772,548 - +1.1

Or see this region's nucleotide sequence