Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yacL and speD are separated by 37 nucleotides speD and speE are separated by 15 nucleotides speE and yacC are separated by 105 nucleotides yacC and cueO are separated by 204 nucleotides
BNILDI_08790: yacL - protein YacL, at 1,763,383 to 1,763,745
yacL
BNILDI_08795: speD - adenosylmethionine decarboxylase, at 1,763,783 to 1,764,577
speD
BNILDI_08800: speE - polyamine aminopropyltransferase, at 1,764,593 to 1,765,459
speE
BNILDI_08805: yacC - YacC family pilotin-like protein, at 1,765,565 to 1,765,873
yacC
BNILDI_08810: cueO - multicopper oxidase CueO, at 1,766,078 to 1,767,628
cueO
Position (kb) 1764
1765
1766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1763.656 kb on + strand, within yacL at 1763.657 kb on - strand, within yacL at 1763.743 kb on + strand at 1763.743 kb on + strand at 1763.748 kb on - strand at 1763.797 kb on + strand at 1763.846 kb on - strand at 1763.898 kb on + strand, within speD at 1763.899 kb on - strand, within speD at 1763.905 kb on + strand, within speD at 1763.905 kb on + strand, within speD at 1764.004 kb on + strand, within speD at 1764.005 kb on - strand, within speD at 1764.022 kb on + strand, within speD at 1764.095 kb on + strand, within speD at 1764.096 kb on - strand, within speD at 1764.126 kb on + strand, within speD at 1764.191 kb on - strand, within speD at 1764.194 kb on + strand, within speD at 1764.195 kb on - strand, within speD at 1764.226 kb on + strand, within speD at 1764.226 kb on + strand, within speD at 1764.226 kb on + strand, within speD at 1764.226 kb on + strand, within speD at 1764.226 kb on + strand, within speD at 1764.226 kb on + strand, within speD at 1764.226 kb on + strand, within speD at 1764.227 kb on - strand, within speD at 1764.227 kb on - strand, within speD at 1764.227 kb on - strand, within speD at 1764.227 kb on - strand, within speD at 1764.230 kb on + strand, within speD at 1764.230 kb on + strand, within speD at 1764.231 kb on - strand, within speD at 1764.238 kb on + strand, within speD at 1764.448 kb on + strand, within speD at 1764.448 kb on + strand, within speD at 1764.449 kb on - strand, within speD at 1764.451 kb on - strand, within speD at 1764.451 kb on - strand, within speD at 1764.451 kb on - strand, within speD at 1764.464 kb on - strand, within speD at 1764.464 kb on - strand, within speD at 1764.465 kb on + strand, within speD at 1764.465 kb on + strand, within speD at 1764.466 kb on - strand, within speD at 1764.466 kb on - strand, within speD at 1764.466 kb on - strand, within speD at 1764.472 kb on + strand, within speD at 1764.472 kb on + strand, within speD at 1764.473 kb on - strand, within speD at 1764.474 kb on + strand, within speD at 1764.474 kb on + strand, within speD at 1764.474 kb on + strand, within speD at 1764.517 kb on - strand at 1764.551 kb on - strand at 1764.595 kb on - strand at 1764.669 kb on + strand at 1764.670 kb on - strand at 1764.783 kb on + strand, within speE at 1764.783 kb on + strand, within speE at 1764.783 kb on + strand, within speE at 1764.826 kb on - strand, within speE at 1764.826 kb on - strand, within speE at 1764.901 kb on + strand, within speE at 1764.936 kb on + strand, within speE at 1764.974 kb on - strand, within speE at 1764.994 kb on + strand, within speE at 1765.087 kb on + strand, within speE at 1765.098 kb on - strand, within speE at 1765.098 kb on - strand, within speE at 1765.102 kb on - strand, within speE at 1765.165 kb on + strand, within speE at 1765.165 kb on + strand, within speE at 1765.165 kb on + strand, within speE at 1765.166 kb on - strand, within speE at 1765.176 kb on - strand, within speE at 1765.272 kb on + strand, within speE at 1765.273 kb on - strand, within speE at 1765.302 kb on - strand, within speE at 1765.397 kb on + strand at 1765.408 kb on - strand at 1765.408 kb on - strand at 1765.468 kb on - strand at 1765.547 kb on - strand at 1765.547 kb on - strand at 1765.759 kb on + strand, within yacC at 1765.764 kb on - strand, within yacC at 1765.822 kb on + strand, within yacC at 1765.886 kb on + strand at 1765.887 kb on - strand at 1765.920 kb on - strand at 1765.931 kb on - strand at 1766.028 kb on - strand at 1766.028 kb on - strand at 1766.073 kb on + strand at 1766.073 kb on + strand at 1766.073 kb on + strand at 1766.077 kb on + strand at 1766.078 kb on - strand at 1766.226 kb on + strand at 1766.230 kb on + strand at 1766.230 kb on + strand at 1766.272 kb on + strand, within cueO at 1766.272 kb on + strand, within cueO at 1766.283 kb on - strand, within cueO at 1766.283 kb on - strand, within cueO at 1766.283 kb on - strand, within cueO at 1766.317 kb on - strand, within cueO at 1766.317 kb on - strand, within cueO at 1766.345 kb on - strand, within cueO at 1766.345 kb on - strand, within cueO at 1766.345 kb on - strand, within cueO at 1766.348 kb on + strand, within cueO at 1766.348 kb on + strand, within cueO at 1766.348 kb on + strand, within cueO at 1766.349 kb on - strand, within cueO at 1766.431 kb on + strand, within cueO at 1766.431 kb on + strand, within cueO
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,763,656 + yacL BNILDI_08790 0.75 -0.6 1,763,657 - yacL BNILDI_08790 0.75 -1.1 1,763,743 + +0.1 1,763,743 + +0.2 1,763,748 - -0.3 1,763,797 + +0.5 1,763,846 - -0.2 1,763,898 + speD BNILDI_08795 0.14 -0.4 1,763,899 - speD BNILDI_08795 0.15 +0.1 1,763,905 + speD BNILDI_08795 0.15 +0.4 1,763,905 + speD BNILDI_08795 0.15 +0.0 1,764,004 + speD BNILDI_08795 0.28 -0.2 1,764,005 - speD BNILDI_08795 0.28 +0.5 1,764,022 + speD BNILDI_08795 0.30 -0.2 1,764,095 + speD BNILDI_08795 0.39 +0.3 1,764,096 - speD BNILDI_08795 0.39 +0.7 1,764,126 + speD BNILDI_08795 0.43 +2.2 1,764,191 - speD BNILDI_08795 0.51 -0.1 1,764,194 + speD BNILDI_08795 0.52 +0.7 1,764,195 - speD BNILDI_08795 0.52 +1.2 1,764,226 + speD BNILDI_08795 0.56 +0.3 1,764,226 + speD BNILDI_08795 0.56 -0.9 1,764,226 + speD BNILDI_08795 0.56 -2.1 1,764,226 + speD BNILDI_08795 0.56 +0.3 1,764,226 + speD BNILDI_08795 0.56 +0.0 1,764,226 + speD BNILDI_08795 0.56 +0.0 1,764,226 + speD BNILDI_08795 0.56 -0.2 1,764,227 - speD BNILDI_08795 0.56 -0.5 1,764,227 - speD BNILDI_08795 0.56 +0.9 1,764,227 - speD BNILDI_08795 0.56 -0.1 1,764,227 - speD BNILDI_08795 0.56 +0.0 1,764,230 + speD BNILDI_08795 0.56 +1.0 1,764,230 + speD BNILDI_08795 0.56 -0.3 1,764,231 - speD BNILDI_08795 0.56 +1.1 1,764,238 + speD BNILDI_08795 0.57 +0.1 1,764,448 + speD BNILDI_08795 0.84 -1.4 1,764,448 + speD BNILDI_08795 0.84 +0.2 1,764,449 - speD BNILDI_08795 0.84 -0.6 1,764,451 - speD BNILDI_08795 0.84 -0.0 1,764,451 - speD BNILDI_08795 0.84 -0.2 1,764,451 - speD BNILDI_08795 0.84 -3.4 1,764,464 - speD BNILDI_08795 0.86 -0.7 1,764,464 - speD BNILDI_08795 0.86 +0.1 1,764,465 + speD BNILDI_08795 0.86 +0.3 1,764,465 + speD BNILDI_08795 0.86 -1.3 1,764,466 - speD BNILDI_08795 0.86 -0.3 1,764,466 - speD BNILDI_08795 0.86 -0.1 1,764,466 - speD BNILDI_08795 0.86 -0.3 1,764,472 + speD BNILDI_08795 0.87 +2.2 1,764,472 + speD BNILDI_08795 0.87 +1.3 1,764,473 - speD BNILDI_08795 0.87 -1.2 1,764,474 + speD BNILDI_08795 0.87 +0.1 1,764,474 + speD BNILDI_08795 0.87 +0.5 1,764,474 + speD BNILDI_08795 0.87 -0.9 1,764,517 - -0.1 1,764,551 - +2.6 1,764,595 - -0.3 1,764,669 + -0.1 1,764,670 - -0.2 1,764,783 + speE BNILDI_08800 0.22 -0.3 1,764,783 + speE BNILDI_08800 0.22 +0.8 1,764,783 + speE BNILDI_08800 0.22 -1.9 1,764,826 - speE BNILDI_08800 0.27 -2.2 1,764,826 - speE BNILDI_08800 0.27 -0.6 1,764,901 + speE BNILDI_08800 0.36 -0.2 1,764,936 + speE BNILDI_08800 0.40 +0.8 1,764,974 - speE BNILDI_08800 0.44 +0.9 1,764,994 + speE BNILDI_08800 0.46 +0.0 1,765,087 + speE BNILDI_08800 0.57 -0.1 1,765,098 - speE BNILDI_08800 0.58 -0.1 1,765,098 - speE BNILDI_08800 0.58 -1.6 1,765,102 - speE BNILDI_08800 0.59 +0.4 1,765,165 + speE BNILDI_08800 0.66 +0.4 1,765,165 + speE BNILDI_08800 0.66 +0.8 1,765,165 + speE BNILDI_08800 0.66 +0.4 1,765,166 - speE BNILDI_08800 0.66 +1.1 1,765,176 - speE BNILDI_08800 0.67 +0.3 1,765,272 + speE BNILDI_08800 0.78 +0.1 1,765,273 - speE BNILDI_08800 0.78 -0.3 1,765,302 - speE BNILDI_08800 0.82 +0.1 1,765,397 + -0.3 1,765,408 - +0.2 1,765,408 - +0.9 1,765,468 - -0.8 1,765,547 - +0.2 1,765,547 - +0.3 1,765,759 + yacC BNILDI_08805 0.63 -0.1 1,765,764 - yacC BNILDI_08805 0.64 +1.0 1,765,822 + yacC BNILDI_08805 0.83 -1.8 1,765,886 + +0.0 1,765,887 - -0.2 1,765,920 - +0.4 1,765,931 - -0.8 1,766,028 - +0.0 1,766,028 - -0.7 1,766,073 + -0.1 1,766,073 + +0.9 1,766,073 + +0.3 1,766,077 + +0.8 1,766,078 - -0.2 1,766,226 + -0.2 1,766,230 + -0.8 1,766,230 + -1.4 1,766,272 + cueO BNILDI_08810 0.13 +1.1 1,766,272 + cueO BNILDI_08810 0.13 -0.7 1,766,283 - cueO BNILDI_08810 0.13 +0.0 1,766,283 - cueO BNILDI_08810 0.13 +0.3 1,766,283 - cueO BNILDI_08810 0.13 +0.9 1,766,317 - cueO BNILDI_08810 0.15 +1.0 1,766,317 - cueO BNILDI_08810 0.15 -0.1 1,766,345 - cueO BNILDI_08810 0.17 -1.4 1,766,345 - cueO BNILDI_08810 0.17 +0.3 1,766,345 - cueO BNILDI_08810 0.17 -0.2 1,766,348 + cueO BNILDI_08810 0.17 +0.1 1,766,348 + cueO BNILDI_08810 0.17 +0.5 1,766,348 + cueO BNILDI_08810 0.17 -0.1 1,766,349 - cueO BNILDI_08810 0.17 -0.7 1,766,431 + cueO BNILDI_08810 0.23 -0.0 1,766,431 + cueO BNILDI_08810 0.23 +0.5
Or see this region's nucleotide sequence