Strain Fitness in Escherichia coli ECRC62 around BNILDI_07490

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntahr and Leu_trna are separated by 195 nucleotidesLeu_trna and BNILDI_07490 are separated by 186 nucleotides BNILDI_07480: ahr - NADPH-dependent aldehyde reductase Ahr, at 1,492,200 to 1,493,219 ahr BNILDI_07485: Leu_trna - tRNA-Leu(caa), at 1,493,415 to 1,493,499 _trna BNILDI_07490: BNILDI_07490 - DUF4102 domain-containing protein, at 1,493,686 to 1,494,276 _07490 Position (kb) 1493 1494 1495Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1492.724 kb on + strand, within ahrat 1492.725 kb on - strand, within ahrat 1492.725 kb on - strand, within ahrat 1492.734 kb on + strand, within ahrat 1492.735 kb on - strand, within ahrat 1492.757 kb on + strand, within ahrat 1492.796 kb on + strand, within ahrat 1492.796 kb on + strand, within ahrat 1492.865 kb on + strand, within ahrat 1493.111 kb on - strand, within ahrat 1493.200 kb on + strandat 1493.201 kb on - strandat 1493.254 kb on + strandat 1493.255 kb on - strandat 1493.255 kb on - strandat 1493.255 kb on - strandat 1493.308 kb on - strandat 1493.383 kb on - strandat 1493.434 kb on + strand, within Leu_trnaat 1493.467 kb on + strand, within Leu_trnaat 1493.508 kb on + strandat 1493.508 kb on + strandat 1493.556 kb on + strandat 1493.572 kb on + strandat 1493.573 kb on - strandat 1493.574 kb on + strandat 1493.575 kb on - strandat 1493.577 kb on + strandat 1493.578 kb on - strandat 1493.607 kb on + strandat 1493.608 kb on - strandat 1493.608 kb on - strandat 1493.613 kb on + strandat 1493.614 kb on - strandat 1493.621 kb on + strandat 1493.621 kb on + strandat 1493.621 kb on + strandat 1493.621 kb on + strandat 1493.621 kb on + strandat 1493.621 kb on + strandat 1493.621 kb on + strandat 1493.621 kb on + strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.622 kb on - strandat 1493.641 kb on + strandat 1493.681 kb on + strandat 1493.682 kb on - strandat 1493.737 kb on + strandat 1493.738 kb on - strandat 1493.739 kb on + strandat 1493.739 kb on + strandat 1493.739 kb on + strandat 1493.790 kb on + strand, within BNILDI_07490at 1493.790 kb on + strand, within BNILDI_07490at 1493.795 kb on - strand, within BNILDI_07490at 1493.949 kb on + strand, within BNILDI_07490at 1494.012 kb on + strand, within BNILDI_07490at 1494.012 kb on + strand, within BNILDI_07490at 1494.090 kb on + strand, within BNILDI_07490at 1494.090 kb on + strand, within BNILDI_07490at 1494.091 kb on - strand, within BNILDI_07490at 1494.122 kb on + strand, within BNILDI_07490at 1494.129 kb on + strand, within BNILDI_07490at 1494.130 kb on - strand, within BNILDI_07490at 1494.130 kb on - strand, within BNILDI_07490at 1494.130 kb on - strand, within BNILDI_07490at 1494.174 kb on + strand, within BNILDI_07490at 1494.175 kb on - strand, within BNILDI_07490at 1494.175 kb on - strand, within BNILDI_07490at 1494.203 kb on + strand, within BNILDI_07490at 1494.246 kb on + strandat 1494.278 kb on - strandat 1494.395 kb on + strandat 1494.395 kb on + strandat 1494.396 kb on - strandat 1494.404 kb on - strandat 1494.428 kb on + strandat 1494.455 kb on + strandat 1494.455 kb on + strandat 1494.455 kb on + strandat 1494.456 kb on - strandat 1494.475 kb on + strandat 1494.569 kb on - strandat 1494.876 kb on + strandat 1495.068 kb on - strandat 1495.086 kb on + strandat 1495.087 kb on - strandat 1495.106 kb on + strandat 1495.106 kb on + strandat 1495.107 kb on - strandat 1495.183 kb on - strandat 1495.183 kb on - strandat 1495.190 kb on + strandat 1495.219 kb on + strandat 1495.253 kb on - strandat 1495.253 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,492,724 + ahr BNILDI_07480 0.51 +1.7
1,492,725 - ahr BNILDI_07480 0.51 -0.0
1,492,725 - ahr BNILDI_07480 0.51 +1.3
1,492,734 + ahr BNILDI_07480 0.52 -0.0
1,492,735 - ahr BNILDI_07480 0.52 -0.8
1,492,757 + ahr BNILDI_07480 0.55 -0.0
1,492,796 + ahr BNILDI_07480 0.58 -0.1
1,492,796 + ahr BNILDI_07480 0.58 -1.6
1,492,865 + ahr BNILDI_07480 0.65 -0.2
1,493,111 - ahr BNILDI_07480 0.89 +0.2
1,493,200 + -1.0
1,493,201 - +0.6
1,493,254 + +0.2
1,493,255 - -1.3
1,493,255 - +0.2
1,493,255 - +0.1
1,493,308 - +0.9
1,493,383 - +0.3
1,493,434 + Leu_trna BNILDI_07485 0.22 +0.9
1,493,467 + Leu_trna BNILDI_07485 0.61 -0.6
1,493,508 + +0.3
1,493,508 + +0.2
1,493,556 + +0.0
1,493,572 + -0.3
1,493,573 - +0.1
1,493,574 + -1.3
1,493,575 - -0.4
1,493,577 + -0.0
1,493,578 - -2.1
1,493,607 + +0.1
1,493,608 - +0.2
1,493,608 - +0.2
1,493,613 + +0.2
1,493,614 - +0.5
1,493,621 + +0.6
1,493,621 + -3.0
1,493,621 + +1.2
1,493,621 + +0.1
1,493,621 + +0.0
1,493,621 + -1.0
1,493,621 + -0.2
1,493,621 + -0.1
1,493,622 - +0.8
1,493,622 - -0.8
1,493,622 - -0.1
1,493,622 - -0.2
1,493,622 - +0.7
1,493,622 - +0.4
1,493,622 - +0.2
1,493,622 - +0.6
1,493,622 - -2.4
1,493,622 - -0.3
1,493,641 + +1.2
1,493,681 + -0.6
1,493,682 - +0.9
1,493,737 + -0.0
1,493,738 - -0.0
1,493,739 + +0.1
1,493,739 + +0.0
1,493,739 + +1.6
1,493,790 + BNILDI_07490 0.18 -0.6
1,493,790 + BNILDI_07490 0.18 -1.2
1,493,795 - BNILDI_07490 0.18 -0.4
1,493,949 + BNILDI_07490 0.45 +1.4
1,494,012 + BNILDI_07490 0.55 -0.2
1,494,012 + BNILDI_07490 0.55 -0.8
1,494,090 + BNILDI_07490 0.68 -0.4
1,494,090 + BNILDI_07490 0.68 +0.1
1,494,091 - BNILDI_07490 0.69 +0.1
1,494,122 + BNILDI_07490 0.74 -1.4
1,494,129 + BNILDI_07490 0.75 -0.9
1,494,130 - BNILDI_07490 0.75 -0.4
1,494,130 - BNILDI_07490 0.75 -0.1
1,494,130 - BNILDI_07490 0.75 -0.5
1,494,174 + BNILDI_07490 0.83 +0.3
1,494,175 - BNILDI_07490 0.83 -0.7
1,494,175 - BNILDI_07490 0.83 +0.7
1,494,203 + BNILDI_07490 0.87 +1.2
1,494,246 + -0.5
1,494,278 - -0.2
1,494,395 + -0.1
1,494,395 + +1.8
1,494,396 - +1.2
1,494,404 - -0.0
1,494,428 + -0.6
1,494,455 + +1.4
1,494,455 + -0.2
1,494,455 + +0.2
1,494,456 - +0.6
1,494,475 + -0.4
1,494,569 - +1.7
1,494,876 + +0.1
1,495,068 - -0.2
1,495,086 + -0.7
1,495,087 - +0.4
1,495,106 + +0.6
1,495,106 + +0.8
1,495,107 - -0.2
1,495,183 - +1.1
1,495,183 - +1.1
1,495,190 + -0.1
1,495,219 + +1.1
1,495,253 - +0.0
1,495,253 - +0.8

Or see this region's nucleotide sequence