Strain Fitness in Escherichia coli ECRC62 around BNILDI_07450

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvalS and holC overlap by 1 nucleotidesholC and pepA are separated by 94 nucleotides BNILDI_07445: valS - valine--tRNA ligase, at 1,483,015 to 1,485,870 valS BNILDI_07450: holC - DNA polymerase III subunit chi, at 1,485,870 to 1,486,352 holC BNILDI_07455: pepA - leucyl aminopeptidase, at 1,486,447 to 1,487,958 pepA Position (kb) 1485 1486 1487Strain fitness (log2 ratio) -2 -1 0 1at 1486.022 kb on + strand, within holCat 1486.023 kb on - strand, within holCat 1486.030 kb on - strand, within holCat 1486.032 kb on - strand, within holCat 1486.113 kb on - strand, within holCat 1486.339 kb on - strandat 1486.342 kb on + strandat 1486.343 kb on - strandat 1486.343 kb on - strandat 1486.448 kb on + strandat 1486.448 kb on + strandat 1486.449 kb on - strandat 1486.578 kb on - strandat 1486.581 kb on + strandat 1486.582 kb on - strandat 1486.865 kb on + strand, within pepAat 1486.865 kb on + strand, within pepAat 1486.866 kb on - strand, within pepAat 1486.866 kb on - strand, within pepAat 1487.030 kb on - strand, within pepAat 1487.030 kb on - strand, within pepAat 1487.043 kb on + strand, within pepAat 1487.079 kb on + strand, within pepAat 1487.080 kb on - strand, within pepAat 1487.080 kb on - strand, within pepAat 1487.198 kb on + strand, within pepAat 1487.318 kb on + strand, within pepAat 1487.319 kb on - strand, within pepAat 1487.319 kb on - strand, within pepA

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,486,022 + holC BNILDI_07450 0.31 -1.3
1,486,023 - holC BNILDI_07450 0.32 -2.0
1,486,030 - holC BNILDI_07450 0.33 -2.0
1,486,032 - holC BNILDI_07450 0.34 -0.7
1,486,113 - holC BNILDI_07450 0.50 -0.8
1,486,339 - +0.3
1,486,342 + +0.8
1,486,343 - -2.1
1,486,343 - -0.6
1,486,448 + +0.3
1,486,448 + -0.4
1,486,449 - -1.2
1,486,578 - +0.1
1,486,581 + +1.4
1,486,582 - +0.0
1,486,865 + pepA BNILDI_07455 0.28 +0.0
1,486,865 + pepA BNILDI_07455 0.28 +0.9
1,486,866 - pepA BNILDI_07455 0.28 -0.1
1,486,866 - pepA BNILDI_07455 0.28 +0.1
1,487,030 - pepA BNILDI_07455 0.39 -1.3
1,487,030 - pepA BNILDI_07455 0.39 +0.9
1,487,043 + pepA BNILDI_07455 0.39 +0.1
1,487,079 + pepA BNILDI_07455 0.42 -1.9
1,487,080 - pepA BNILDI_07455 0.42 -0.0
1,487,080 - pepA BNILDI_07455 0.42 -1.6
1,487,198 + pepA BNILDI_07455 0.50 +0.6
1,487,318 + pepA BNILDI_07455 0.58 -0.1
1,487,319 - pepA BNILDI_07455 0.58 +0.5
1,487,319 - pepA BNILDI_07455 0.58 +0.9

Or see this region's nucleotide sequence