Strain Fitness in Escherichia coli ECRC62 around BNILDI_07170

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_07155 and BNILDI_07160 are separated by 9 nucleotidesBNILDI_07160 and BNILDI_07165 overlap by 4 nucleotidesBNILDI_07165 and fabG are separated by 9 nucleotidesfabG and BNILDI_07175 are separated by 209 nucleotidesBNILDI_07175 and BNILDI_07180 are separated by 0 nucleotides BNILDI_07155: BNILDI_07155 - acyl-CoA hydratase, at 1,427,905 to 1,428,681 _07155 BNILDI_07160: BNILDI_07160 - 4-hydroxyphenylpyruvate dioxygenase, at 1,428,691 to 1,429,347 _07160 BNILDI_07165: BNILDI_07165 - Hydroxypyruvate isomerase, at 1,429,344 to 1,429,532 _07165 BNILDI_07170: fabG - 3-ketoacyl-ACP reductase, at 1,429,542 to 1,430,333 fabG BNILDI_07175: BNILDI_07175 - TetR/AcrR family transcriptional regulator, at 1,430,543 to 1,431,181 _07175 BNILDI_07180: BNILDI_07180 - Cell division protein YtfB, at 1,431,182 to 1,431,811 _07180 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1428.739 kb on - strandat 1428.739 kb on - strandat 1428.741 kb on + strandat 1428.742 kb on - strandat 1428.783 kb on + strand, within BNILDI_07160at 1428.856 kb on - strand, within BNILDI_07160at 1428.974 kb on + strand, within BNILDI_07160at 1428.974 kb on + strand, within BNILDI_07160at 1428.975 kb on - strand, within BNILDI_07160at 1428.982 kb on + strand, within BNILDI_07160at 1429.048 kb on + strand, within BNILDI_07160at 1429.179 kb on - strand, within BNILDI_07160at 1429.180 kb on + strand, within BNILDI_07160at 1429.180 kb on + strand, within BNILDI_07160at 1429.181 kb on - strand, within BNILDI_07160at 1429.181 kb on - strand, within BNILDI_07160at 1429.181 kb on - strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.221 kb on + strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.222 kb on - strand, within BNILDI_07160at 1429.224 kb on - strand, within BNILDI_07160at 1429.224 kb on - strand, within BNILDI_07160at 1429.240 kb on + strand, within BNILDI_07160at 1429.313 kb on + strandat 1429.314 kb on - strandat 1429.314 kb on - strandat 1429.316 kb on + strandat 1429.316 kb on + strandat 1429.317 kb on - strandat 1429.350 kb on + strandat 1429.473 kb on - strand, within BNILDI_07165at 1429.504 kb on - strand, within BNILDI_07165at 1429.518 kb on + strandat 1429.519 kb on - strandat 1429.557 kb on - strandat 1429.557 kb on - strandat 1429.561 kb on - strandat 1429.598 kb on - strandat 1429.607 kb on + strandat 1429.641 kb on - strand, within fabGat 1429.699 kb on + strand, within fabGat 1429.700 kb on - strand, within fabGat 1429.702 kb on + strand, within fabGat 1429.702 kb on + strand, within fabGat 1429.703 kb on - strand, within fabGat 1429.725 kb on - strand, within fabGat 1429.725 kb on - strand, within fabGat 1429.757 kb on - strand, within fabGat 1429.757 kb on - strand, within fabGat 1429.757 kb on - strand, within fabGat 1429.776 kb on - strand, within fabGat 1429.794 kb on + strand, within fabGat 1429.835 kb on - strand, within fabGat 1429.933 kb on - strand, within fabGat 1430.192 kb on + strand, within fabGat 1430.333 kb on + strandat 1430.339 kb on - strandat 1430.376 kb on - strandat 1430.547 kb on - strandat 1430.592 kb on + strandat 1430.619 kb on - strand, within BNILDI_07175at 1430.640 kb on + strand, within BNILDI_07175at 1430.645 kb on - strand, within BNILDI_07175at 1430.648 kb on - strand, within BNILDI_07175at 1430.668 kb on + strand, within BNILDI_07175at 1430.732 kb on + strand, within BNILDI_07175at 1430.999 kb on - strand, within BNILDI_07175at 1431.202 kb on + strandat 1431.228 kb on - strandat 1431.239 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,428,739 - -0.4
1,428,739 - +1.7
1,428,741 + -1.8
1,428,742 - +1.2
1,428,783 + BNILDI_07160 0.14 +1.4
1,428,856 - BNILDI_07160 0.25 +1.3
1,428,974 + BNILDI_07160 0.43 -0.1
1,428,974 + BNILDI_07160 0.43 +0.9
1,428,975 - BNILDI_07160 0.43 -0.0
1,428,982 + BNILDI_07160 0.44 +4.2
1,429,048 + BNILDI_07160 0.54 -0.1
1,429,179 - BNILDI_07160 0.74 +0.1
1,429,180 + BNILDI_07160 0.74 -0.2
1,429,180 + BNILDI_07160 0.74 +0.2
1,429,181 - BNILDI_07160 0.75 -0.3
1,429,181 - BNILDI_07160 0.75 -0.9
1,429,181 - BNILDI_07160 0.75 +0.3
1,429,221 + BNILDI_07160 0.81 -0.6
1,429,221 + BNILDI_07160 0.81 -0.6
1,429,221 + BNILDI_07160 0.81 -1.7
1,429,221 + BNILDI_07160 0.81 -0.1
1,429,221 + BNILDI_07160 0.81 -1.5
1,429,222 - BNILDI_07160 0.81 +0.5
1,429,222 - BNILDI_07160 0.81 +0.3
1,429,222 - BNILDI_07160 0.81 +0.1
1,429,222 - BNILDI_07160 0.81 -0.4
1,429,222 - BNILDI_07160 0.81 -1.5
1,429,224 - BNILDI_07160 0.81 +0.2
1,429,224 - BNILDI_07160 0.81 +1.5
1,429,240 + BNILDI_07160 0.84 +0.1
1,429,313 + +0.3
1,429,314 - -1.1
1,429,314 - +0.4
1,429,316 + -0.4
1,429,316 + -0.1
1,429,317 - -0.3
1,429,350 + +0.1
1,429,473 - BNILDI_07165 0.68 -0.5
1,429,504 - BNILDI_07165 0.85 +0.3
1,429,518 + -0.6
1,429,519 - +1.0
1,429,557 - -2.2
1,429,557 - -1.1
1,429,561 - +0.0
1,429,598 - +0.2
1,429,607 + -1.3
1,429,641 - fabG BNILDI_07170 0.12 -1.6
1,429,699 + fabG BNILDI_07170 0.20 -0.8
1,429,700 - fabG BNILDI_07170 0.20 -0.9
1,429,702 + fabG BNILDI_07170 0.20 -0.5
1,429,702 + fabG BNILDI_07170 0.20 +0.4
1,429,703 - fabG BNILDI_07170 0.20 +0.4
1,429,725 - fabG BNILDI_07170 0.23 +0.2
1,429,725 - fabG BNILDI_07170 0.23 -0.1
1,429,757 - fabG BNILDI_07170 0.27 -0.4
1,429,757 - fabG BNILDI_07170 0.27 -1.6
1,429,757 - fabG BNILDI_07170 0.27 -0.9
1,429,776 - fabG BNILDI_07170 0.30 +0.1
1,429,794 + fabG BNILDI_07170 0.32 -0.5
1,429,835 - fabG BNILDI_07170 0.37 +1.3
1,429,933 - fabG BNILDI_07170 0.49 -0.3
1,430,192 + fabG BNILDI_07170 0.82 +0.5
1,430,333 + -0.3
1,430,339 - -0.1
1,430,376 - -0.2
1,430,547 - -0.1
1,430,592 + -0.2
1,430,619 - BNILDI_07175 0.12 -0.3
1,430,640 + BNILDI_07175 0.15 -0.4
1,430,645 - BNILDI_07175 0.16 +0.9
1,430,648 - BNILDI_07175 0.16 -0.3
1,430,668 + BNILDI_07175 0.20 +0.3
1,430,732 + BNILDI_07175 0.30 -0.3
1,430,999 - BNILDI_07175 0.71 -1.5
1,431,202 + -1.3
1,431,228 - +0.2
1,431,239 - +0.9

Or see this region's nucleotide sequence