Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_07155 and BNILDI_07160 are separated by 9 nucleotides BNILDI_07160 and BNILDI_07165 overlap by 4 nucleotides BNILDI_07165 and fabG are separated by 9 nucleotides fabG and BNILDI_07175 are separated by 209 nucleotides BNILDI_07175 and BNILDI_07180 are separated by 0 nucleotides
BNILDI_07155: BNILDI_07155 - acyl-CoA hydratase, at 1,427,905 to 1,428,681
_07155
BNILDI_07160: BNILDI_07160 - 4-hydroxyphenylpyruvate dioxygenase, at 1,428,691 to 1,429,347
_07160
BNILDI_07165: BNILDI_07165 - Hydroxypyruvate isomerase, at 1,429,344 to 1,429,532
_07165
BNILDI_07170: fabG - 3-ketoacyl-ACP reductase, at 1,429,542 to 1,430,333
fabG
BNILDI_07175: BNILDI_07175 - TetR/AcrR family transcriptional regulator, at 1,430,543 to 1,431,181
_07175
BNILDI_07180: BNILDI_07180 - Cell division protein YtfB, at 1,431,182 to 1,431,811
_07180
Position (kb)
1429
1430
1431 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1428.739 kb on - strand at 1428.739 kb on - strand at 1428.741 kb on + strand at 1428.742 kb on - strand at 1428.783 kb on + strand, within BNILDI_07160 at 1428.856 kb on - strand, within BNILDI_07160 at 1428.974 kb on + strand, within BNILDI_07160 at 1428.974 kb on + strand, within BNILDI_07160 at 1428.975 kb on - strand, within BNILDI_07160 at 1428.982 kb on + strand, within BNILDI_07160 at 1429.048 kb on + strand, within BNILDI_07160 at 1429.179 kb on - strand, within BNILDI_07160 at 1429.180 kb on + strand, within BNILDI_07160 at 1429.180 kb on + strand, within BNILDI_07160 at 1429.181 kb on - strand, within BNILDI_07160 at 1429.181 kb on - strand, within BNILDI_07160 at 1429.181 kb on - strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.221 kb on + strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.222 kb on - strand, within BNILDI_07160 at 1429.224 kb on - strand, within BNILDI_07160 at 1429.224 kb on - strand, within BNILDI_07160 at 1429.240 kb on + strand, within BNILDI_07160 at 1429.313 kb on + strand at 1429.314 kb on - strand at 1429.314 kb on - strand at 1429.316 kb on + strand at 1429.316 kb on + strand at 1429.317 kb on - strand at 1429.350 kb on + strand at 1429.473 kb on - strand, within BNILDI_07165 at 1429.504 kb on - strand, within BNILDI_07165 at 1429.518 kb on + strand at 1429.519 kb on - strand at 1429.557 kb on - strand at 1429.557 kb on - strand at 1429.561 kb on - strand at 1429.598 kb on - strand at 1429.607 kb on + strand at 1429.641 kb on - strand, within fabG at 1429.699 kb on + strand, within fabG at 1429.700 kb on - strand, within fabG at 1429.702 kb on + strand, within fabG at 1429.702 kb on + strand, within fabG at 1429.703 kb on - strand, within fabG at 1429.725 kb on - strand, within fabG at 1429.725 kb on - strand, within fabG at 1429.757 kb on - strand, within fabG at 1429.757 kb on - strand, within fabG at 1429.757 kb on - strand, within fabG at 1429.776 kb on - strand, within fabG at 1429.794 kb on + strand, within fabG at 1429.835 kb on - strand, within fabG at 1429.933 kb on - strand, within fabG at 1430.192 kb on + strand, within fabG at 1430.333 kb on + strand at 1430.339 kb on - strand at 1430.376 kb on - strand at 1430.547 kb on - strand at 1430.592 kb on + strand at 1430.619 kb on - strand, within BNILDI_07175 at 1430.640 kb on + strand, within BNILDI_07175 at 1430.645 kb on - strand, within BNILDI_07175 at 1430.648 kb on - strand, within BNILDI_07175 at 1430.668 kb on + strand, within BNILDI_07175 at 1430.732 kb on + strand, within BNILDI_07175 at 1430.999 kb on - strand, within BNILDI_07175 at 1431.202 kb on + strand at 1431.228 kb on - strand at 1431.239 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,428,739 - -0.4 1,428,739 - +1.7 1,428,741 + -1.8 1,428,742 - +1.2 1,428,783 + BNILDI_07160 0.14 +1.4 1,428,856 - BNILDI_07160 0.25 +1.3 1,428,974 + BNILDI_07160 0.43 -0.1 1,428,974 + BNILDI_07160 0.43 +0.9 1,428,975 - BNILDI_07160 0.43 -0.0 1,428,982 + BNILDI_07160 0.44 +4.2 1,429,048 + BNILDI_07160 0.54 -0.1 1,429,179 - BNILDI_07160 0.74 +0.1 1,429,180 + BNILDI_07160 0.74 -0.2 1,429,180 + BNILDI_07160 0.74 +0.2 1,429,181 - BNILDI_07160 0.75 -0.3 1,429,181 - BNILDI_07160 0.75 -0.9 1,429,181 - BNILDI_07160 0.75 +0.3 1,429,221 + BNILDI_07160 0.81 -0.6 1,429,221 + BNILDI_07160 0.81 -0.6 1,429,221 + BNILDI_07160 0.81 -1.7 1,429,221 + BNILDI_07160 0.81 -0.1 1,429,221 + BNILDI_07160 0.81 -1.5 1,429,222 - BNILDI_07160 0.81 +0.5 1,429,222 - BNILDI_07160 0.81 +0.3 1,429,222 - BNILDI_07160 0.81 +0.1 1,429,222 - BNILDI_07160 0.81 -0.4 1,429,222 - BNILDI_07160 0.81 -1.5 1,429,224 - BNILDI_07160 0.81 +0.2 1,429,224 - BNILDI_07160 0.81 +1.5 1,429,240 + BNILDI_07160 0.84 +0.1 1,429,313 + +0.3 1,429,314 - -1.1 1,429,314 - +0.4 1,429,316 + -0.4 1,429,316 + -0.1 1,429,317 - -0.3 1,429,350 + +0.1 1,429,473 - BNILDI_07165 0.68 -0.5 1,429,504 - BNILDI_07165 0.85 +0.3 1,429,518 + -0.6 1,429,519 - +1.0 1,429,557 - -2.2 1,429,557 - -1.1 1,429,561 - +0.0 1,429,598 - +0.2 1,429,607 + -1.3 1,429,641 - fabG BNILDI_07170 0.12 -1.6 1,429,699 + fabG BNILDI_07170 0.20 -0.8 1,429,700 - fabG BNILDI_07170 0.20 -0.9 1,429,702 + fabG BNILDI_07170 0.20 -0.5 1,429,702 + fabG BNILDI_07170 0.20 +0.4 1,429,703 - fabG BNILDI_07170 0.20 +0.4 1,429,725 - fabG BNILDI_07170 0.23 +0.2 1,429,725 - fabG BNILDI_07170 0.23 -0.1 1,429,757 - fabG BNILDI_07170 0.27 -0.4 1,429,757 - fabG BNILDI_07170 0.27 -1.6 1,429,757 - fabG BNILDI_07170 0.27 -0.9 1,429,776 - fabG BNILDI_07170 0.30 +0.1 1,429,794 + fabG BNILDI_07170 0.32 -0.5 1,429,835 - fabG BNILDI_07170 0.37 +1.3 1,429,933 - fabG BNILDI_07170 0.49 -0.3 1,430,192 + fabG BNILDI_07170 0.82 +0.5 1,430,333 + -0.3 1,430,339 - -0.1 1,430,376 - -0.2 1,430,547 - -0.1 1,430,592 + -0.2 1,430,619 - BNILDI_07175 0.12 -0.3 1,430,640 + BNILDI_07175 0.15 -0.4 1,430,645 - BNILDI_07175 0.16 +0.9 1,430,648 - BNILDI_07175 0.16 -0.3 1,430,668 + BNILDI_07175 0.20 +0.3 1,430,732 + BNILDI_07175 0.30 -0.3 1,430,999 - BNILDI_07175 0.71 -1.5 1,431,202 + -1.3 1,431,228 - +0.2 1,431,239 - +0.9
Or see this region's nucleotide sequence