Strain Fitness in Escherichia coli ECRC62 around BNILDI_07130

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpriB and rpsR are separated by 4 nucleotidesrpsR and rplI are separated by 41 nucleotidesrplI and BNILDI_07130 are separated by 111 nucleotidesBNILDI_07130 and BNILDI_07135 are separated by 52 nucleotides BNILDI_07115: priB - primosomal replication protein N, at 1,420,262 to 1,420,576 priB BNILDI_07120: rpsR - 30S ribosomal protein S18, at 1,420,581 to 1,420,808 rpsR BNILDI_07125: rplI - 50S ribosomal protein L9, at 1,420,850 to 1,421,299 rplI BNILDI_07130: BNILDI_07130 - Bacterial extracellular solute-binding protein, family 7, at 1,421,411 to 1,422,382 _07130 BNILDI_07135: BNILDI_07135 - TRAP transporter large permease, at 1,422,435 to 1,423,736 _07135 Position (kb) 1421 1422 1423Strain fitness (log2 ratio) -2 -1 0 1 2at 1420.848 kb on + strandat 1421.409 kb on - strandat 1421.409 kb on - strandat 1421.413 kb on - strandat 1421.417 kb on - strandat 1421.489 kb on + strandat 1421.512 kb on + strand, within BNILDI_07130at 1421.513 kb on - strand, within BNILDI_07130at 1421.513 kb on - strand, within BNILDI_07130at 1421.516 kb on + strand, within BNILDI_07130at 1421.516 kb on + strand, within BNILDI_07130at 1421.595 kb on + strand, within BNILDI_07130at 1421.595 kb on + strand, within BNILDI_07130at 1421.595 kb on + strand, within BNILDI_07130at 1421.596 kb on - strand, within BNILDI_07130at 1421.596 kb on - strand, within BNILDI_07130at 1421.596 kb on - strand, within BNILDI_07130at 1421.596 kb on - strand, within BNILDI_07130at 1421.804 kb on - strand, within BNILDI_07130at 1421.805 kb on + strand, within BNILDI_07130at 1421.806 kb on - strand, within BNILDI_07130at 1422.211 kb on + strand, within BNILDI_07130at 1422.546 kb on - strandat 1422.570 kb on - strand, within BNILDI_07135at 1422.874 kb on - strand, within BNILDI_07135at 1423.143 kb on - strand, within BNILDI_07135at 1423.156 kb on - strand, within BNILDI_07135at 1423.218 kb on - strand, within BNILDI_07135at 1423.218 kb on - strand, within BNILDI_07135at 1423.223 kb on + strand, within BNILDI_07135at 1423.244 kb on - strand, within BNILDI_07135at 1423.257 kb on - strand, within BNILDI_07135at 1423.260 kb on - strand, within BNILDI_07135at 1423.260 kb on - strand, within BNILDI_07135at 1423.260 kb on - strand, within BNILDI_07135at 1423.260 kb on - strand, within BNILDI_07135at 1423.272 kb on - strand, within BNILDI_07135at 1423.272 kb on - strand, within BNILDI_07135at 1423.311 kb on - strand, within BNILDI_07135at 1423.328 kb on - strand, within BNILDI_07135

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,420,848 + -0.8
1,421,409 - -0.2
1,421,409 - +0.3
1,421,413 - -1.5
1,421,417 - +0.7
1,421,489 + +1.2
1,421,512 + BNILDI_07130 0.10 +1.8
1,421,513 - BNILDI_07130 0.10 +0.5
1,421,513 - BNILDI_07130 0.10 -2.3
1,421,516 + BNILDI_07130 0.11 -0.1
1,421,516 + BNILDI_07130 0.11 +0.5
1,421,595 + BNILDI_07130 0.19 +1.8
1,421,595 + BNILDI_07130 0.19 +0.1
1,421,595 + BNILDI_07130 0.19 +1.2
1,421,596 - BNILDI_07130 0.19 +0.0
1,421,596 - BNILDI_07130 0.19 +0.3
1,421,596 - BNILDI_07130 0.19 +0.4
1,421,596 - BNILDI_07130 0.19 -0.4
1,421,804 - BNILDI_07130 0.40 -0.4
1,421,805 + BNILDI_07130 0.41 +0.4
1,421,806 - BNILDI_07130 0.41 -0.2
1,422,211 + BNILDI_07130 0.82 -0.6
1,422,546 - +0.1
1,422,570 - BNILDI_07135 0.10 -0.4
1,422,874 - BNILDI_07135 0.34 +0.0
1,423,143 - BNILDI_07135 0.54 -0.3
1,423,156 - BNILDI_07135 0.55 -0.2
1,423,218 - BNILDI_07135 0.60 +0.6
1,423,218 - BNILDI_07135 0.60 +0.3
1,423,223 + BNILDI_07135 0.61 +1.4
1,423,244 - BNILDI_07135 0.62 +0.0
1,423,257 - BNILDI_07135 0.63 +0.3
1,423,260 - BNILDI_07135 0.63 +0.1
1,423,260 - BNILDI_07135 0.63 +0.4
1,423,260 - BNILDI_07135 0.63 +0.6
1,423,260 - BNILDI_07135 0.63 +0.3
1,423,272 - BNILDI_07135 0.64 +1.5
1,423,272 - BNILDI_07135 0.64 -1.7
1,423,311 - BNILDI_07135 0.67 -2.4
1,423,328 - BNILDI_07135 0.69 -0.6

Or see this region's nucleotide sequence