Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt priB and rpsR are separated by 4 nucleotides rpsR and rplI are separated by 41 nucleotides rplI and BNILDI_07130 are separated by 111 nucleotides BNILDI_07130 and BNILDI_07135 are separated by 52 nucleotides
BNILDI_07115: priB - primosomal replication protein N, at 1,420,262 to 1,420,576
priB
BNILDI_07120: rpsR - 30S ribosomal protein S18, at 1,420,581 to 1,420,808
rpsR
BNILDI_07125: rplI - 50S ribosomal protein L9, at 1,420,850 to 1,421,299
rplI
BNILDI_07130: BNILDI_07130 - Bacterial extracellular solute-binding protein, family 7, at 1,421,411 to 1,422,382
_07130
BNILDI_07135: BNILDI_07135 - TRAP transporter large permease, at 1,422,435 to 1,423,736
_07135
Position (kb)
1421
1422
1423 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1420.848 kb on + strand at 1421.409 kb on - strand at 1421.409 kb on - strand at 1421.413 kb on - strand at 1421.417 kb on - strand at 1421.489 kb on + strand at 1421.512 kb on + strand, within BNILDI_07130 at 1421.513 kb on - strand, within BNILDI_07130 at 1421.513 kb on - strand, within BNILDI_07130 at 1421.516 kb on + strand, within BNILDI_07130 at 1421.516 kb on + strand, within BNILDI_07130 at 1421.595 kb on + strand, within BNILDI_07130 at 1421.595 kb on + strand, within BNILDI_07130 at 1421.595 kb on + strand, within BNILDI_07130 at 1421.596 kb on - strand, within BNILDI_07130 at 1421.596 kb on - strand, within BNILDI_07130 at 1421.596 kb on - strand, within BNILDI_07130 at 1421.596 kb on - strand, within BNILDI_07130 at 1421.804 kb on - strand, within BNILDI_07130 at 1421.805 kb on + strand, within BNILDI_07130 at 1421.806 kb on - strand, within BNILDI_07130 at 1422.211 kb on + strand, within BNILDI_07130 at 1422.546 kb on - strand at 1422.570 kb on - strand, within BNILDI_07135 at 1422.874 kb on - strand, within BNILDI_07135 at 1423.143 kb on - strand, within BNILDI_07135 at 1423.156 kb on - strand, within BNILDI_07135 at 1423.218 kb on - strand, within BNILDI_07135 at 1423.218 kb on - strand, within BNILDI_07135 at 1423.223 kb on + strand, within BNILDI_07135 at 1423.244 kb on - strand, within BNILDI_07135 at 1423.257 kb on - strand, within BNILDI_07135 at 1423.260 kb on - strand, within BNILDI_07135 at 1423.260 kb on - strand, within BNILDI_07135 at 1423.260 kb on - strand, within BNILDI_07135 at 1423.260 kb on - strand, within BNILDI_07135 at 1423.272 kb on - strand, within BNILDI_07135 at 1423.272 kb on - strand, within BNILDI_07135 at 1423.311 kb on - strand, within BNILDI_07135 at 1423.328 kb on - strand, within BNILDI_07135
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,420,848 + -0.8 1,421,409 - -0.2 1,421,409 - +0.3 1,421,413 - -1.5 1,421,417 - +0.7 1,421,489 + +1.2 1,421,512 + BNILDI_07130 0.10 +1.8 1,421,513 - BNILDI_07130 0.10 +0.5 1,421,513 - BNILDI_07130 0.10 -2.3 1,421,516 + BNILDI_07130 0.11 -0.1 1,421,516 + BNILDI_07130 0.11 +0.5 1,421,595 + BNILDI_07130 0.19 +1.8 1,421,595 + BNILDI_07130 0.19 +0.1 1,421,595 + BNILDI_07130 0.19 +1.2 1,421,596 - BNILDI_07130 0.19 +0.0 1,421,596 - BNILDI_07130 0.19 +0.3 1,421,596 - BNILDI_07130 0.19 +0.4 1,421,596 - BNILDI_07130 0.19 -0.4 1,421,804 - BNILDI_07130 0.40 -0.4 1,421,805 + BNILDI_07130 0.41 +0.4 1,421,806 - BNILDI_07130 0.41 -0.2 1,422,211 + BNILDI_07130 0.82 -0.6 1,422,546 - +0.1 1,422,570 - BNILDI_07135 0.10 -0.4 1,422,874 - BNILDI_07135 0.34 +0.0 1,423,143 - BNILDI_07135 0.54 -0.3 1,423,156 - BNILDI_07135 0.55 -0.2 1,423,218 - BNILDI_07135 0.60 +0.6 1,423,218 - BNILDI_07135 0.60 +0.3 1,423,223 + BNILDI_07135 0.61 +1.4 1,423,244 - BNILDI_07135 0.62 +0.0 1,423,257 - BNILDI_07135 0.63 +0.3 1,423,260 - BNILDI_07135 0.63 +0.1 1,423,260 - BNILDI_07135 0.63 +0.4 1,423,260 - BNILDI_07135 0.63 +0.6 1,423,260 - BNILDI_07135 0.63 +0.3 1,423,272 - BNILDI_07135 0.64 +1.5 1,423,272 - BNILDI_07135 0.64 -1.7 1,423,311 - BNILDI_07135 0.67 -2.4 1,423,328 - BNILDI_07135 0.69 -0.6
Or see this region's nucleotide sequence