Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjbJ and zur are separated by 41 nucleotides zur and yjbM are separated by 317 nucleotides yjbM and BNILDI_06325 are separated by 23 nucleotides
BNILDI_06310: yjbJ - UPF0337 protein YjbJ, at 1,260,913 to 1,261,122
yjbJ
BNILDI_06315: zur - zinc uptake transcriptional repressor Zur, at 1,261,164 to 1,261,679
zur
BNILDI_06320: yjbM - Uncharacterized protein YjbM, at 1,261,997 to 1,262,251
yjbM
BNILDI_06325: BNILDI_06325 - DUF2713 domain-containing protein, at 1,262,275 to 1,262,988
_06325
Position (kb)
1261
1262
1263 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1261.015 kb on - strand, within yjbJ at 1261.015 kb on - strand, within yjbJ at 1261.146 kb on - strand at 1261.146 kb on - strand at 1261.146 kb on - strand at 1261.155 kb on + strand at 1261.155 kb on + strand at 1261.155 kb on + strand at 1261.155 kb on + strand at 1261.277 kb on + strand, within zur at 1261.278 kb on - strand, within zur at 1261.278 kb on - strand, within zur at 1261.278 kb on - strand, within zur at 1261.314 kb on - strand, within zur at 1261.376 kb on + strand, within zur at 1261.377 kb on - strand, within zur at 1261.377 kb on - strand, within zur at 1261.391 kb on + strand, within zur at 1261.391 kb on + strand, within zur at 1261.392 kb on - strand, within zur at 1261.426 kb on + strand, within zur at 1261.426 kb on + strand, within zur at 1261.427 kb on - strand, within zur at 1261.427 kb on - strand, within zur at 1261.427 kb on - strand, within zur at 1261.427 kb on - strand, within zur at 1261.449 kb on - strand, within zur at 1261.489 kb on + strand, within zur at 1261.530 kb on + strand, within zur at 1261.546 kb on + strand, within zur at 1261.620 kb on - strand, within zur at 1261.654 kb on - strand at 1261.718 kb on + strand at 1262.127 kb on + strand, within yjbM at 1262.134 kb on + strand, within yjbM at 1262.291 kb on - strand at 1262.382 kb on + strand, within BNILDI_06325 at 1262.534 kb on + strand, within BNILDI_06325 at 1262.717 kb on + strand, within BNILDI_06325 at 1263.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,261,015 - yjbJ BNILDI_06310 0.49 +0.4 1,261,015 - yjbJ BNILDI_06310 0.49 +1.0 1,261,146 - -0.4 1,261,146 - -0.2 1,261,146 - +1.6 1,261,155 + -2.3 1,261,155 + +0.8 1,261,155 + -2.0 1,261,155 + -0.6 1,261,277 + zur BNILDI_06315 0.22 +0.4 1,261,278 - zur BNILDI_06315 0.22 -0.0 1,261,278 - zur BNILDI_06315 0.22 +0.1 1,261,278 - zur BNILDI_06315 0.22 -0.3 1,261,314 - zur BNILDI_06315 0.29 -0.1 1,261,376 + zur BNILDI_06315 0.41 +0.3 1,261,377 - zur BNILDI_06315 0.41 -0.3 1,261,377 - zur BNILDI_06315 0.41 -0.9 1,261,391 + zur BNILDI_06315 0.44 +0.4 1,261,391 + zur BNILDI_06315 0.44 -2.7 1,261,392 - zur BNILDI_06315 0.44 +0.5 1,261,426 + zur BNILDI_06315 0.51 +1.3 1,261,426 + zur BNILDI_06315 0.51 -2.4 1,261,427 - zur BNILDI_06315 0.51 +0.3 1,261,427 - zur BNILDI_06315 0.51 +1.7 1,261,427 - zur BNILDI_06315 0.51 +0.0 1,261,427 - zur BNILDI_06315 0.51 -0.1 1,261,449 - zur BNILDI_06315 0.55 -0.1 1,261,489 + zur BNILDI_06315 0.63 +0.4 1,261,530 + zur BNILDI_06315 0.71 -1.2 1,261,546 + zur BNILDI_06315 0.74 -0.7 1,261,620 - zur BNILDI_06315 0.88 -3.0 1,261,654 - -0.7 1,261,718 + +0.5 1,262,127 + yjbM BNILDI_06320 0.51 -0.7 1,262,134 + yjbM BNILDI_06320 0.54 -1.0 1,262,291 - +0.3 1,262,382 + BNILDI_06325 0.15 -0.8 1,262,534 + BNILDI_06325 0.36 +0.6 1,262,717 + BNILDI_06325 0.62 -1.2 1,263,172 - -0.6
Or see this region's nucleotide sequence