Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dinF and yjbJ are separated by 115 nucleotides yjbJ and zur are separated by 41 nucleotides zur and yjbM are separated by 317 nucleotides
BNILDI_06305: dinF - MATE family efflux transporter DinF, at 1,259,472 to 1,260,797
dinF
BNILDI_06310: yjbJ - UPF0337 protein YjbJ, at 1,260,913 to 1,261,122
yjbJ
BNILDI_06315: zur - zinc uptake transcriptional repressor Zur, at 1,261,164 to 1,261,679
zur
BNILDI_06320: yjbM - Uncharacterized protein YjbM, at 1,261,997 to 1,262,251
yjbM
Position (kb)
1260
1261
1262 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1259.914 kb on + strand, within dinF at 1259.941 kb on - strand, within dinF at 1260.023 kb on + strand, within dinF at 1260.241 kb on + strand, within dinF at 1260.279 kb on - strand, within dinF at 1260.400 kb on + strand, within dinF at 1260.400 kb on + strand, within dinF at 1260.400 kb on + strand, within dinF at 1260.401 kb on - strand, within dinF at 1260.401 kb on - strand, within dinF at 1260.401 kb on - strand, within dinF at 1260.434 kb on - strand, within dinF at 1260.456 kb on + strand, within dinF at 1260.457 kb on - strand, within dinF at 1260.533 kb on + strand, within dinF at 1260.533 kb on + strand, within dinF at 1260.534 kb on - strand, within dinF at 1260.574 kb on - strand, within dinF at 1260.593 kb on + strand, within dinF at 1260.594 kb on - strand, within dinF at 1260.594 kb on - strand, within dinF at 1260.821 kb on - strand at 1260.842 kb on + strand at 1260.842 kb on + strand at 1260.848 kb on + strand at 1260.894 kb on + strand at 1260.913 kb on - strand at 1260.918 kb on + strand at 1260.996 kb on + strand, within yjbJ at 1261.015 kb on - strand, within yjbJ at 1261.015 kb on - strand, within yjbJ at 1261.146 kb on - strand at 1261.146 kb on - strand at 1261.146 kb on - strand at 1261.155 kb on + strand at 1261.155 kb on + strand at 1261.155 kb on + strand at 1261.155 kb on + strand at 1261.277 kb on + strand, within zur at 1261.278 kb on - strand, within zur at 1261.278 kb on - strand, within zur at 1261.278 kb on - strand, within zur at 1261.314 kb on - strand, within zur at 1261.376 kb on + strand, within zur at 1261.377 kb on - strand, within zur at 1261.377 kb on - strand, within zur at 1261.391 kb on + strand, within zur at 1261.391 kb on + strand, within zur at 1261.392 kb on - strand, within zur at 1261.426 kb on + strand, within zur at 1261.426 kb on + strand, within zur at 1261.427 kb on - strand, within zur at 1261.427 kb on - strand, within zur at 1261.427 kb on - strand, within zur at 1261.427 kb on - strand, within zur at 1261.449 kb on - strand, within zur at 1261.489 kb on + strand, within zur at 1261.530 kb on + strand, within zur at 1261.546 kb on + strand, within zur at 1261.620 kb on - strand, within zur at 1261.654 kb on - strand at 1261.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,259,914 + dinF BNILDI_06305 0.33 +1.0 1,259,941 - dinF BNILDI_06305 0.35 -0.0 1,260,023 + dinF BNILDI_06305 0.42 +0.8 1,260,241 + dinF BNILDI_06305 0.58 -0.2 1,260,279 - dinF BNILDI_06305 0.61 -0.0 1,260,400 + dinF BNILDI_06305 0.70 +0.1 1,260,400 + dinF BNILDI_06305 0.70 -0.8 1,260,400 + dinF BNILDI_06305 0.70 -0.1 1,260,401 - dinF BNILDI_06305 0.70 -1.1 1,260,401 - dinF BNILDI_06305 0.70 +0.7 1,260,401 - dinF BNILDI_06305 0.70 +0.4 1,260,434 - dinF BNILDI_06305 0.73 +0.5 1,260,456 + dinF BNILDI_06305 0.74 -0.9 1,260,457 - dinF BNILDI_06305 0.74 -0.3 1,260,533 + dinF BNILDI_06305 0.80 -0.1 1,260,533 + dinF BNILDI_06305 0.80 -0.1 1,260,534 - dinF BNILDI_06305 0.80 +0.3 1,260,574 - dinF BNILDI_06305 0.83 +0.3 1,260,593 + dinF BNILDI_06305 0.85 +0.1 1,260,594 - dinF BNILDI_06305 0.85 +0.5 1,260,594 - dinF BNILDI_06305 0.85 +0.1 1,260,821 - +0.2 1,260,842 + +0.3 1,260,842 + -0.0 1,260,848 + +0.5 1,260,894 + -0.7 1,260,913 - +1.0 1,260,918 + +1.2 1,260,996 + yjbJ BNILDI_06310 0.40 -0.7 1,261,015 - yjbJ BNILDI_06310 0.49 +0.4 1,261,015 - yjbJ BNILDI_06310 0.49 +1.0 1,261,146 - -0.4 1,261,146 - -0.2 1,261,146 - +1.6 1,261,155 + -2.3 1,261,155 + +0.8 1,261,155 + -2.0 1,261,155 + -0.6 1,261,277 + zur BNILDI_06315 0.22 +0.4 1,261,278 - zur BNILDI_06315 0.22 -0.0 1,261,278 - zur BNILDI_06315 0.22 +0.1 1,261,278 - zur BNILDI_06315 0.22 -0.3 1,261,314 - zur BNILDI_06315 0.29 -0.1 1,261,376 + zur BNILDI_06315 0.41 +0.3 1,261,377 - zur BNILDI_06315 0.41 -0.3 1,261,377 - zur BNILDI_06315 0.41 -0.9 1,261,391 + zur BNILDI_06315 0.44 +0.4 1,261,391 + zur BNILDI_06315 0.44 -2.7 1,261,392 - zur BNILDI_06315 0.44 +0.5 1,261,426 + zur BNILDI_06315 0.51 +1.3 1,261,426 + zur BNILDI_06315 0.51 -2.4 1,261,427 - zur BNILDI_06315 0.51 +0.3 1,261,427 - zur BNILDI_06315 0.51 +1.7 1,261,427 - zur BNILDI_06315 0.51 +0.0 1,261,427 - zur BNILDI_06315 0.51 -0.1 1,261,449 - zur BNILDI_06315 0.55 -0.1 1,261,489 + zur BNILDI_06315 0.63 +0.4 1,261,530 + zur BNILDI_06315 0.71 -1.2 1,261,546 + zur BNILDI_06315 0.74 -0.7 1,261,620 - zur BNILDI_06315 0.88 -3.0 1,261,654 - -0.7 1,261,718 + +0.5
Or see this region's nucleotide sequence