Strain Fitness in Escherichia coli ECRC62 around BNILDI_06310

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdinF and yjbJ are separated by 115 nucleotidesyjbJ and zur are separated by 41 nucleotideszur and yjbM are separated by 317 nucleotides BNILDI_06305: dinF - MATE family efflux transporter DinF, at 1,259,472 to 1,260,797 dinF BNILDI_06310: yjbJ - UPF0337 protein YjbJ, at 1,260,913 to 1,261,122 yjbJ BNILDI_06315: zur - zinc uptake transcriptional repressor Zur, at 1,261,164 to 1,261,679 zur BNILDI_06320: yjbM - Uncharacterized protein YjbM, at 1,261,997 to 1,262,251 yjbM Position (kb) 1260 1261 1262Strain fitness (log2 ratio) -3 -2 -1 0 1at 1259.914 kb on + strand, within dinFat 1259.941 kb on - strand, within dinFat 1260.023 kb on + strand, within dinFat 1260.241 kb on + strand, within dinFat 1260.279 kb on - strand, within dinFat 1260.400 kb on + strand, within dinFat 1260.400 kb on + strand, within dinFat 1260.400 kb on + strand, within dinFat 1260.401 kb on - strand, within dinFat 1260.401 kb on - strand, within dinFat 1260.401 kb on - strand, within dinFat 1260.434 kb on - strand, within dinFat 1260.456 kb on + strand, within dinFat 1260.457 kb on - strand, within dinFat 1260.533 kb on + strand, within dinFat 1260.533 kb on + strand, within dinFat 1260.534 kb on - strand, within dinFat 1260.574 kb on - strand, within dinFat 1260.593 kb on + strand, within dinFat 1260.594 kb on - strand, within dinFat 1260.594 kb on - strand, within dinFat 1260.821 kb on - strandat 1260.842 kb on + strandat 1260.842 kb on + strandat 1260.848 kb on + strandat 1260.894 kb on + strandat 1260.913 kb on - strandat 1260.918 kb on + strandat 1260.996 kb on + strand, within yjbJat 1261.015 kb on - strand, within yjbJat 1261.015 kb on - strand, within yjbJat 1261.146 kb on - strandat 1261.146 kb on - strandat 1261.146 kb on - strandat 1261.155 kb on + strandat 1261.155 kb on + strandat 1261.155 kb on + strandat 1261.155 kb on + strandat 1261.277 kb on + strand, within zurat 1261.278 kb on - strand, within zurat 1261.278 kb on - strand, within zurat 1261.278 kb on - strand, within zurat 1261.314 kb on - strand, within zurat 1261.376 kb on + strand, within zurat 1261.377 kb on - strand, within zurat 1261.377 kb on - strand, within zurat 1261.391 kb on + strand, within zurat 1261.391 kb on + strand, within zurat 1261.392 kb on - strand, within zurat 1261.426 kb on + strand, within zurat 1261.426 kb on + strand, within zurat 1261.427 kb on - strand, within zurat 1261.427 kb on - strand, within zurat 1261.427 kb on - strand, within zurat 1261.427 kb on - strand, within zurat 1261.449 kb on - strand, within zurat 1261.489 kb on + strand, within zurat 1261.530 kb on + strand, within zurat 1261.546 kb on + strand, within zurat 1261.620 kb on - strand, within zurat 1261.654 kb on - strandat 1261.718 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,259,914 + dinF BNILDI_06305 0.33 +1.0
1,259,941 - dinF BNILDI_06305 0.35 -0.0
1,260,023 + dinF BNILDI_06305 0.42 +0.8
1,260,241 + dinF BNILDI_06305 0.58 -0.2
1,260,279 - dinF BNILDI_06305 0.61 -0.0
1,260,400 + dinF BNILDI_06305 0.70 +0.1
1,260,400 + dinF BNILDI_06305 0.70 -0.8
1,260,400 + dinF BNILDI_06305 0.70 -0.1
1,260,401 - dinF BNILDI_06305 0.70 -1.1
1,260,401 - dinF BNILDI_06305 0.70 +0.7
1,260,401 - dinF BNILDI_06305 0.70 +0.4
1,260,434 - dinF BNILDI_06305 0.73 +0.5
1,260,456 + dinF BNILDI_06305 0.74 -0.9
1,260,457 - dinF BNILDI_06305 0.74 -0.3
1,260,533 + dinF BNILDI_06305 0.80 -0.1
1,260,533 + dinF BNILDI_06305 0.80 -0.1
1,260,534 - dinF BNILDI_06305 0.80 +0.3
1,260,574 - dinF BNILDI_06305 0.83 +0.3
1,260,593 + dinF BNILDI_06305 0.85 +0.1
1,260,594 - dinF BNILDI_06305 0.85 +0.5
1,260,594 - dinF BNILDI_06305 0.85 +0.1
1,260,821 - +0.2
1,260,842 + +0.3
1,260,842 + -0.0
1,260,848 + +0.5
1,260,894 + -0.7
1,260,913 - +1.0
1,260,918 + +1.2
1,260,996 + yjbJ BNILDI_06310 0.40 -0.7
1,261,015 - yjbJ BNILDI_06310 0.49 +0.4
1,261,015 - yjbJ BNILDI_06310 0.49 +1.0
1,261,146 - -0.4
1,261,146 - -0.2
1,261,146 - +1.6
1,261,155 + -2.3
1,261,155 + +0.8
1,261,155 + -2.0
1,261,155 + -0.6
1,261,277 + zur BNILDI_06315 0.22 +0.4
1,261,278 - zur BNILDI_06315 0.22 -0.0
1,261,278 - zur BNILDI_06315 0.22 +0.1
1,261,278 - zur BNILDI_06315 0.22 -0.3
1,261,314 - zur BNILDI_06315 0.29 -0.1
1,261,376 + zur BNILDI_06315 0.41 +0.3
1,261,377 - zur BNILDI_06315 0.41 -0.3
1,261,377 - zur BNILDI_06315 0.41 -0.9
1,261,391 + zur BNILDI_06315 0.44 +0.4
1,261,391 + zur BNILDI_06315 0.44 -2.7
1,261,392 - zur BNILDI_06315 0.44 +0.5
1,261,426 + zur BNILDI_06315 0.51 +1.3
1,261,426 + zur BNILDI_06315 0.51 -2.4
1,261,427 - zur BNILDI_06315 0.51 +0.3
1,261,427 - zur BNILDI_06315 0.51 +1.7
1,261,427 - zur BNILDI_06315 0.51 +0.0
1,261,427 - zur BNILDI_06315 0.51 -0.1
1,261,449 - zur BNILDI_06315 0.55 -0.1
1,261,489 + zur BNILDI_06315 0.63 +0.4
1,261,530 + zur BNILDI_06315 0.71 -1.2
1,261,546 + zur BNILDI_06315 0.74 -0.7
1,261,620 - zur BNILDI_06315 0.88 -3.0
1,261,654 - -0.7
1,261,718 + +0.5

Or see this region's nucleotide sequence