Strain Fitness in Escherichia coli ECRC62 around BNILDI_06175

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_06165 and BNILDI_06170 are separated by 5 nucleotidesBNILDI_06170 and BNILDI_06175 are separated by 35 nucleotidesBNILDI_06175 and lysC are separated by 144 nucleotides BNILDI_06165: BNILDI_06165 - SPFH domain / Band 7 family, at 1,230,727 to 1,231,854 _06165 BNILDI_06170: BNILDI_06170 - nucleotidyltransferase, at 1,231,860 to 1,232,651 _06170 BNILDI_06175: BNILDI_06175 - zeta toxin, at 1,232,687 to 1,233,613 _06175 BNILDI_06180: lysC - lysine-sensitive aspartokinase 3, at 1,233,758 to 1,235,107 lysC Position (kb) 1232 1233 1234Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1231.802 kb on + strandat 1231.802 kb on + strandat 1231.803 kb on - strandat 1231.913 kb on - strandat 1231.950 kb on + strand, within BNILDI_06170at 1231.951 kb on - strand, within BNILDI_06170at 1231.951 kb on - strand, within BNILDI_06170at 1231.951 kb on - strand, within BNILDI_06170at 1231.951 kb on - strand, within BNILDI_06170at 1232.043 kb on + strand, within BNILDI_06170at 1232.099 kb on - strand, within BNILDI_06170at 1232.271 kb on + strand, within BNILDI_06170at 1232.272 kb on - strand, within BNILDI_06170at 1232.274 kb on + strand, within BNILDI_06170at 1232.305 kb on - strand, within BNILDI_06170at 1232.343 kb on + strand, within BNILDI_06170at 1232.420 kb on - strand, within BNILDI_06170at 1232.461 kb on + strand, within BNILDI_06170at 1232.462 kb on - strand, within BNILDI_06170at 1232.471 kb on - strand, within BNILDI_06170at 1232.505 kb on + strand, within BNILDI_06170at 1232.527 kb on + strand, within BNILDI_06170at 1232.527 kb on + strand, within BNILDI_06170at 1232.528 kb on - strand, within BNILDI_06170at 1232.528 kb on - strand, within BNILDI_06170at 1232.620 kb on + strandat 1232.650 kb on - strandat 1232.683 kb on - strandat 1232.686 kb on - strandat 1232.689 kb on - strandat 1232.719 kb on + strandat 1232.759 kb on - strandat 1232.759 kb on - strandat 1232.763 kb on - strandat 1232.908 kb on + strand, within BNILDI_06175at 1232.908 kb on + strand, within BNILDI_06175at 1232.912 kb on - strand, within BNILDI_06175at 1232.961 kb on - strand, within BNILDI_06175at 1233.155 kb on - strand, within BNILDI_06175at 1233.208 kb on + strand, within BNILDI_06175at 1233.211 kb on + strand, within BNILDI_06175at 1233.425 kb on - strand, within BNILDI_06175at 1233.469 kb on - strand, within BNILDI_06175at 1233.536 kb on - strandat 1233.650 kb on - strandat 1233.689 kb on - strandat 1233.692 kb on + strandat 1233.719 kb on + strandat 1233.756 kb on + strandat 1233.757 kb on - strandat 1234.085 kb on + strand, within lysCat 1234.156 kb on + strand, within lysCat 1234.250 kb on - strand, within lysCat 1234.409 kb on + strand, within lysCat 1234.428 kb on + strand, within lysCat 1234.429 kb on - strand, within lysCat 1234.429 kb on - strand, within lysCat 1234.473 kb on - strand, within lysCat 1234.531 kb on + strand, within lysCat 1234.532 kb on - strand, within lysCat 1234.574 kb on + strand, within lysC

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,231,802 + +0.1
1,231,802 + +0.2
1,231,803 - +0.2
1,231,913 - +0.2
1,231,950 + BNILDI_06170 0.11 +0.2
1,231,951 - BNILDI_06170 0.11 +0.4
1,231,951 - BNILDI_06170 0.11 +2.4
1,231,951 - BNILDI_06170 0.11 -0.5
1,231,951 - BNILDI_06170 0.11 -0.9
1,232,043 + BNILDI_06170 0.23 +0.7
1,232,099 - BNILDI_06170 0.30 +0.0
1,232,271 + BNILDI_06170 0.52 +0.2
1,232,272 - BNILDI_06170 0.52 -0.2
1,232,274 + BNILDI_06170 0.52 +0.7
1,232,305 - BNILDI_06170 0.56 -1.4
1,232,343 + BNILDI_06170 0.61 +0.7
1,232,420 - BNILDI_06170 0.71 -1.9
1,232,461 + BNILDI_06170 0.76 +0.2
1,232,462 - BNILDI_06170 0.76 +1.3
1,232,471 - BNILDI_06170 0.77 -0.8
1,232,505 + BNILDI_06170 0.81 -1.2
1,232,527 + BNILDI_06170 0.84 -2.3
1,232,527 + BNILDI_06170 0.84 -0.0
1,232,528 - BNILDI_06170 0.84 -0.4
1,232,528 - BNILDI_06170 0.84 -0.0
1,232,620 + +0.4
1,232,650 - +0.3
1,232,683 - -0.4
1,232,686 - -0.3
1,232,689 - -3.3
1,232,719 + -0.2
1,232,759 - +0.1
1,232,759 - +0.1
1,232,763 - -0.2
1,232,908 + BNILDI_06175 0.24 +0.2
1,232,908 + BNILDI_06175 0.24 +0.1
1,232,912 - BNILDI_06175 0.24 +0.2
1,232,961 - BNILDI_06175 0.30 +0.6
1,233,155 - BNILDI_06175 0.50 -0.5
1,233,208 + BNILDI_06175 0.56 +1.1
1,233,211 + BNILDI_06175 0.57 -0.1
1,233,425 - BNILDI_06175 0.80 -0.0
1,233,469 - BNILDI_06175 0.84 -0.2
1,233,536 - +0.1
1,233,650 - -0.5
1,233,689 - -0.1
1,233,692 + +0.2
1,233,719 + +0.1
1,233,756 + -0.3
1,233,757 - -0.2
1,234,085 + lysC BNILDI_06180 0.24 -0.1
1,234,156 + lysC BNILDI_06180 0.29 +0.1
1,234,250 - lysC BNILDI_06180 0.36 +0.7
1,234,409 + lysC BNILDI_06180 0.48 -1.2
1,234,428 + lysC BNILDI_06180 0.50 -0.5
1,234,429 - lysC BNILDI_06180 0.50 +0.3
1,234,429 - lysC BNILDI_06180 0.50 +0.4
1,234,473 - lysC BNILDI_06180 0.53 -0.8
1,234,531 + lysC BNILDI_06180 0.57 +0.4
1,234,532 - lysC BNILDI_06180 0.57 -0.1
1,234,574 + lysC BNILDI_06180 0.60 +0.6

Or see this region's nucleotide sequence