Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aceK and BNILDI_06130 overlap by 32 nucleotides BNILDI_06130 and iclR are separated by 317 nucleotides
BNILDI_06125: aceK - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 1,217,905 to 1,219,641
aceK
BNILDI_06130: BNILDI_06130 - ShET2 enterotoxin, N-terminal region, at 1,219,610 to 1,221,184
_06130
BNILDI_06135: iclR - glyoxylate bypass operon transcriptional repressor IclR, at 1,221,502 to 1,222,326
iclR
Position (kb)
1219
1220
1221
1222 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1218.615 kb on + strand, within aceK at 1218.671 kb on - strand, within aceK at 1218.683 kb on - strand, within aceK at 1218.754 kb on + strand, within aceK at 1218.757 kb on - strand, within aceK at 1218.818 kb on + strand, within aceK at 1219.056 kb on + strand, within aceK at 1219.079 kb on + strand, within aceK at 1219.145 kb on - strand, within aceK at 1219.145 kb on - strand, within aceK at 1219.145 kb on - strand, within aceK at 1219.145 kb on - strand, within aceK at 1219.225 kb on + strand, within aceK at 1219.225 kb on + strand, within aceK at 1219.226 kb on - strand, within aceK at 1219.226 kb on - strand, within aceK at 1219.421 kb on - strand, within aceK at 1219.723 kb on + strand at 1219.724 kb on - strand at 1219.872 kb on + strand, within BNILDI_06130 at 1220.468 kb on + strand, within BNILDI_06130 at 1220.528 kb on - strand, within BNILDI_06130 at 1220.727 kb on - strand, within BNILDI_06130 at 1221.519 kb on - strand at 1221.546 kb on + strand at 1221.589 kb on - strand, within iclR at 1221.649 kb on - strand, within iclR at 1221.771 kb on - strand, within iclR at 1221.771 kb on - strand, within iclR at 1221.771 kb on - strand, within iclR at 1221.771 kb on - strand, within iclR at 1221.992 kb on - strand, within iclR at 1221.992 kb on - strand, within iclR at 1222.005 kb on + strand, within iclR
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,218,615 + aceK BNILDI_06125 0.41 -0.3 1,218,671 - aceK BNILDI_06125 0.44 +3.2 1,218,683 - aceK BNILDI_06125 0.45 -0.1 1,218,754 + aceK BNILDI_06125 0.49 -0.2 1,218,757 - aceK BNILDI_06125 0.49 +4.5 1,218,818 + aceK BNILDI_06125 0.53 +0.3 1,219,056 + aceK BNILDI_06125 0.66 +1.5 1,219,079 + aceK BNILDI_06125 0.68 +0.4 1,219,145 - aceK BNILDI_06125 0.71 +0.0 1,219,145 - aceK BNILDI_06125 0.71 +0.3 1,219,145 - aceK BNILDI_06125 0.71 +0.1 1,219,145 - aceK BNILDI_06125 0.71 -0.1 1,219,225 + aceK BNILDI_06125 0.76 -1.7 1,219,225 + aceK BNILDI_06125 0.76 -0.3 1,219,226 - aceK BNILDI_06125 0.76 +0.1 1,219,226 - aceK BNILDI_06125 0.76 -0.1 1,219,421 - aceK BNILDI_06125 0.87 -0.0 1,219,723 + -0.8 1,219,724 - +0.9 1,219,872 + BNILDI_06130 0.17 -1.0 1,220,468 + BNILDI_06130 0.54 +0.0 1,220,528 - BNILDI_06130 0.58 -2.6 1,220,727 - BNILDI_06130 0.71 +0.4 1,221,519 - -0.6 1,221,546 + -0.1 1,221,589 - iclR BNILDI_06135 0.11 -1.9 1,221,649 - iclR BNILDI_06135 0.18 -0.3 1,221,771 - iclR BNILDI_06135 0.33 -1.7 1,221,771 - iclR BNILDI_06135 0.33 +0.1 1,221,771 - iclR BNILDI_06135 0.33 -1.0 1,221,771 - iclR BNILDI_06135 0.33 +0.3 1,221,992 - iclR BNILDI_06135 0.59 +0.5 1,221,992 - iclR BNILDI_06135 0.59 +1.1 1,222,005 + iclR BNILDI_06135 0.61 -0.9
Or see this region's nucleotide sequence