Strain Fitness in Escherichia coli ECRC62 around BNILDI_06130

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaceK and BNILDI_06130 overlap by 32 nucleotidesBNILDI_06130 and iclR are separated by 317 nucleotides BNILDI_06125: aceK - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 1,217,905 to 1,219,641 aceK BNILDI_06130: BNILDI_06130 - ShET2 enterotoxin, N-terminal region, at 1,219,610 to 1,221,184 _06130 BNILDI_06135: iclR - glyoxylate bypass operon transcriptional repressor IclR, at 1,221,502 to 1,222,326 iclR Position (kb) 1219 1220 1221 1222Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1218.615 kb on + strand, within aceKat 1218.671 kb on - strand, within aceKat 1218.683 kb on - strand, within aceKat 1218.754 kb on + strand, within aceKat 1218.757 kb on - strand, within aceKat 1218.818 kb on + strand, within aceKat 1219.056 kb on + strand, within aceKat 1219.079 kb on + strand, within aceKat 1219.145 kb on - strand, within aceKat 1219.145 kb on - strand, within aceKat 1219.145 kb on - strand, within aceKat 1219.145 kb on - strand, within aceKat 1219.225 kb on + strand, within aceKat 1219.225 kb on + strand, within aceKat 1219.226 kb on - strand, within aceKat 1219.226 kb on - strand, within aceKat 1219.421 kb on - strand, within aceKat 1219.723 kb on + strandat 1219.724 kb on - strandat 1219.872 kb on + strand, within BNILDI_06130at 1220.468 kb on + strand, within BNILDI_06130at 1220.528 kb on - strand, within BNILDI_06130at 1220.727 kb on - strand, within BNILDI_06130at 1221.519 kb on - strandat 1221.546 kb on + strandat 1221.589 kb on - strand, within iclRat 1221.649 kb on - strand, within iclRat 1221.771 kb on - strand, within iclRat 1221.771 kb on - strand, within iclRat 1221.771 kb on - strand, within iclRat 1221.771 kb on - strand, within iclRat 1221.992 kb on - strand, within iclRat 1221.992 kb on - strand, within iclRat 1222.005 kb on + strand, within iclR

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,218,615 + aceK BNILDI_06125 0.41 -0.3
1,218,671 - aceK BNILDI_06125 0.44 +3.2
1,218,683 - aceK BNILDI_06125 0.45 -0.1
1,218,754 + aceK BNILDI_06125 0.49 -0.2
1,218,757 - aceK BNILDI_06125 0.49 +4.5
1,218,818 + aceK BNILDI_06125 0.53 +0.3
1,219,056 + aceK BNILDI_06125 0.66 +1.5
1,219,079 + aceK BNILDI_06125 0.68 +0.4
1,219,145 - aceK BNILDI_06125 0.71 +0.0
1,219,145 - aceK BNILDI_06125 0.71 +0.3
1,219,145 - aceK BNILDI_06125 0.71 +0.1
1,219,145 - aceK BNILDI_06125 0.71 -0.1
1,219,225 + aceK BNILDI_06125 0.76 -1.7
1,219,225 + aceK BNILDI_06125 0.76 -0.3
1,219,226 - aceK BNILDI_06125 0.76 +0.1
1,219,226 - aceK BNILDI_06125 0.76 -0.1
1,219,421 - aceK BNILDI_06125 0.87 -0.0
1,219,723 + -0.8
1,219,724 - +0.9
1,219,872 + BNILDI_06130 0.17 -1.0
1,220,468 + BNILDI_06130 0.54 +0.0
1,220,528 - BNILDI_06130 0.58 -2.6
1,220,727 - BNILDI_06130 0.71 +0.4
1,221,519 - -0.6
1,221,546 + -0.1
1,221,589 - iclR BNILDI_06135 0.11 -1.9
1,221,649 - iclR BNILDI_06135 0.18 -0.3
1,221,771 - iclR BNILDI_06135 0.33 -1.7
1,221,771 - iclR BNILDI_06135 0.33 +0.1
1,221,771 - iclR BNILDI_06135 0.33 -1.0
1,221,771 - iclR BNILDI_06135 0.33 +0.3
1,221,992 - iclR BNILDI_06135 0.59 +0.5
1,221,992 - iclR BNILDI_06135 0.59 +1.1
1,222,005 + iclR BNILDI_06135 0.61 -0.9

Or see this region's nucleotide sequence