Strain Fitness in Escherichia coli ECRC62 around BNILDI_05555

Experiment: D-Glucose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose
1,098,363	+	cpxR	BNILDI_05545	0.78	-0.6
1,098,364	-	cpxR	BNILDI_05545	0.78	+0.2
1,098,469	-				-0.6
1,098,469	-				-0.4
1,098,524	-				-0.6
1,098,524	-				-0.2
1,098,528	-				-0.2
1,098,545	+				-0.8
1,098,576	+				-0.4
1,098,577	-				-0.5
1,098,587	-				-0.8
1,098,620	+				-0.6
1,098,675	+				+0.7
1,098,675	+				+1.0
1,098,676	-				-0.9
1,098,676	-				+0.1
1,098,676	-				-0.1
1,098,776	-	cpxP	BNILDI_05550	0.22	+0.2
1,098,799	+	cpxP	BNILDI_05550	0.26	-0.2
1,098,799	+	cpxP	BNILDI_05550	0.26	-0.5
1,098,799	+	cpxP	BNILDI_05550	0.26	-0.9
1,098,799	+	cpxP	BNILDI_05550	0.26	-1.8
1,098,800	-	cpxP	BNILDI_05550	0.26	+0.1
1,098,800	-	cpxP	BNILDI_05550	0.26	+0.2
1,098,800	-	cpxP	BNILDI_05550	0.26	-0.1
1,098,800	-	cpxP	BNILDI_05550	0.26	-0.6
1,098,813	+	cpxP	BNILDI_05550	0.29	+0.9
1,098,886	+	cpxP	BNILDI_05550	0.44	-0.8
1,099,029	-	cpxP	BNILDI_05550	0.72	-0.1
1,099,137	+				-0.6
1,099,147	+				+0.1
1,099,148	-				+0.1
1,099,148	-				+0.5
1,099,169	+				+0.8
1,099,170	-				+0.4
1,099,287	+				-0.3
1,099,312	+				+0.6
1,099,312	+				+0.4
1,099,312	+				-0.7
1,099,316	+				-0.1
1,099,430	+	fieF	BNILDI_05555	0.13	+1.4
1,099,487	-	fieF	BNILDI_05555	0.19	+0.3
1,099,487	-	fieF	BNILDI_05555	0.19	-0.5
1,099,501	-	fieF	BNILDI_05555	0.20	-1.3
1,099,545	-	fieF	BNILDI_05555	0.25	+0.5
1,099,577	+	fieF	BNILDI_05555	0.29	-0.0
1,099,577	+	fieF	BNILDI_05555	0.29	+1.1
1,099,577	+	fieF	BNILDI_05555	0.29	-0.9
1,099,577	+	fieF	BNILDI_05555	0.29	+2.0
1,099,578	-	fieF	BNILDI_05555	0.29	-0.3
1,099,578	-	fieF	BNILDI_05555	0.29	-0.3
1,099,600	+	fieF	BNILDI_05555	0.31	-0.2
1,099,600	+	fieF	BNILDI_05555	0.31	-0.4
1,099,600	+	fieF	BNILDI_05555	0.31	-0.2
1,099,601	-	fieF	BNILDI_05555	0.31	-0.8
1,099,634	-	fieF	BNILDI_05555	0.35	+0.2
1,099,771	+	fieF	BNILDI_05555	0.50	-0.0
1,099,772	-	fieF	BNILDI_05555	0.50	+0.1
1,099,772	-	fieF	BNILDI_05555	0.50	-1.1
1,099,772	-	fieF	BNILDI_05555	0.50	-1.8
1,099,790	+	fieF	BNILDI_05555	0.52	-0.5
1,099,790	+	fieF	BNILDI_05555	0.52	+1.2
1,099,833	+	fieF	BNILDI_05555	0.57	+0.1
1,099,881	+	fieF	BNILDI_05555	0.62	+0.4
1,099,882	-	fieF	BNILDI_05555	0.63	-0.1
1,099,884	-	fieF	BNILDI_05555	0.63	-1.7
1,099,888	+	fieF	BNILDI_05555	0.63	-0.7
1,099,889	-	fieF	BNILDI_05555	0.63	+0.2
1,099,889	-	fieF	BNILDI_05555	0.63	-1.3
1,099,889	-	fieF	BNILDI_05555	0.63	-0.4
1,099,889	-	fieF	BNILDI_05555	0.63	+0.1
1,099,892	+	fieF	BNILDI_05555	0.64	+0.2
1,100,099	+	fieF	BNILDI_05555	0.87	+0.1
1,100,099	+	fieF	BNILDI_05555	0.87	-0.6
1,100,099	+	fieF	BNILDI_05555	0.87	+2.2
1,100,099	+	fieF	BNILDI_05555	0.87	-0.4
1,100,100	-	fieF	BNILDI_05555	0.87	+0.4
1,100,100	-	fieF	BNILDI_05555	0.87	-1.4
1,100,100	-	fieF	BNILDI_05555	0.87	+0.1
1,100,100	-	fieF	BNILDI_05555	0.87	-0.2
1,100,100	-	fieF	BNILDI_05555	0.87	-0.8
1,100,100	-	fieF	BNILDI_05555	0.87	-0.5
1,100,100	-	fieF	BNILDI_05555	0.87	-0.4
1,100,100	-	fieF	BNILDI_05555	0.87	+1.8
1,100,117	-	fieF	BNILDI_05555	0.89	-0.5
1,100,155	+				-0.6
1,100,155	+				-1.4
1,100,155	+				-0.3
1,100,155	+				+0.1
1,100,207	+				+0.2
1,100,207	+				-1.7
1,100,224	+		BNILDI_05560	0.56	+0.1
1,100,224	+		BNILDI_05560	0.56	-0.1
1,100,225	-		BNILDI_05560	0.57	+0.0
1,100,310	+				-2.1
1,100,313	+				+0.5
1,100,313	+				+0.3
1,100,314	-				-2.4
1,100,536	-	pfkA	BNILDI_05565	0.14	-0.8
1,100,551	+	pfkA	BNILDI_05565	0.16	-0.4
1,100,558	-	pfkA	BNILDI_05565	0.16	-2.4
1,100,718	+	pfkA	BNILDI_05565	0.33	-1.0
1,100,718	+	pfkA	BNILDI_05565	0.33	-0.7
1,100,718	+	pfkA	BNILDI_05565	0.33	-2.8
1,100,719	-	pfkA	BNILDI_05565	0.33	+0.4
1,100,719	-	pfkA	BNILDI_05565	0.33	-1.9
1,100,806	-	pfkA	BNILDI_05565	0.42	-2.7
1,100,889	-	pfkA	BNILDI_05565	0.51	-0.8
1,101,008	-	pfkA	BNILDI_05565	0.63	+1.4
1,101,072	-	pfkA	BNILDI_05565	0.70	-5.5
1,101,072	-	pfkA	BNILDI_05565	0.70	-3.7
1,101,072	-	pfkA	BNILDI_05565	0.70	-1.4