Strain Fitness in Escherichia coli ECRC62 around BNILDI_05415

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_05405 and BNILDI_05410 are separated by 228 nucleotidesBNILDI_05410 and BNILDI_05415 are separated by 0 nucleotidesBNILDI_05415 and BNILDI_05420 are separated by 85 nucleotidesBNILDI_05420 and yiiE are separated by 426 nucleotides BNILDI_05405: BNILDI_05405 - alpha/beta hydrolase, at 1,070,006 to 1,070,914 _05405 BNILDI_05410: BNILDI_05410 - Toxin HigB-2, at 1,071,143 to 1,071,454 _05410 BNILDI_05415: BNILDI_05415 - transcriptional regulator, at 1,071,455 to 1,071,745 _05415 BNILDI_05420: BNILDI_05420 - hypothetical protein, at 1,071,831 to 1,071,923 _05420 BNILDI_05425: yiiE - Uncharacterized protein YiiE, at 1,072,350 to 1,072,568 yiiE Position (kb) 1071 1072Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1070.474 kb on + strand, within BNILDI_05405at 1070.476 kb on + strand, within BNILDI_05405at 1070.476 kb on + strand, within BNILDI_05405at 1070.476 kb on + strand, within BNILDI_05405at 1070.476 kb on + strand, within BNILDI_05405at 1070.477 kb on - strand, within BNILDI_05405at 1070.477 kb on - strand, within BNILDI_05405at 1070.477 kb on - strand, within BNILDI_05405at 1070.477 kb on - strand, within BNILDI_05405at 1070.519 kb on + strand, within BNILDI_05405at 1070.520 kb on - strand, within BNILDI_05405at 1070.563 kb on + strand, within BNILDI_05405at 1070.563 kb on + strand, within BNILDI_05405at 1070.564 kb on - strand, within BNILDI_05405at 1070.564 kb on - strand, within BNILDI_05405at 1070.564 kb on - strand, within BNILDI_05405at 1070.617 kb on - strand, within BNILDI_05405at 1070.679 kb on + strand, within BNILDI_05405at 1070.679 kb on + strand, within BNILDI_05405at 1070.682 kb on + strand, within BNILDI_05405at 1070.683 kb on - strand, within BNILDI_05405at 1070.690 kb on + strand, within BNILDI_05405at 1070.702 kb on + strand, within BNILDI_05405at 1070.703 kb on - strand, within BNILDI_05405at 1070.729 kb on + strand, within BNILDI_05405at 1070.735 kb on + strand, within BNILDI_05405at 1070.735 kb on + strand, within BNILDI_05405at 1070.767 kb on + strand, within BNILDI_05405at 1070.767 kb on + strand, within BNILDI_05405at 1070.768 kb on - strand, within BNILDI_05405at 1070.768 kb on - strand, within BNILDI_05405at 1070.771 kb on + strand, within BNILDI_05405at 1070.771 kb on + strand, within BNILDI_05405at 1070.814 kb on + strand, within BNILDI_05405at 1070.815 kb on - strand, within BNILDI_05405at 1070.815 kb on - strand, within BNILDI_05405at 1070.917 kb on + strandat 1070.917 kb on + strandat 1070.917 kb on + strandat 1070.917 kb on + strandat 1070.917 kb on + strandat 1070.951 kb on - strandat 1071.065 kb on - strandat 1071.065 kb on - strandat 1071.070 kb on + strandat 1071.076 kb on - strandat 1071.076 kb on - strandat 1071.076 kb on - strandat 1071.138 kb on + strandat 1071.255 kb on + strand, within BNILDI_05410at 1071.255 kb on + strand, within BNILDI_05410at 1071.255 kb on + strand, within BNILDI_05410at 1071.255 kb on + strand, within BNILDI_05410at 1071.255 kb on + strand, within BNILDI_05410at 1071.255 kb on + strand, within BNILDI_05410at 1071.256 kb on - strand, within BNILDI_05410at 1071.256 kb on - strand, within BNILDI_05410at 1071.258 kb on + strand, within BNILDI_05410at 1071.259 kb on - strand, within BNILDI_05410at 1071.331 kb on + strand, within BNILDI_05410at 1071.335 kb on + strand, within BNILDI_05410at 1071.336 kb on - strand, within BNILDI_05410at 1071.336 kb on - strand, within BNILDI_05410at 1071.349 kb on + strand, within BNILDI_05410at 1071.356 kb on + strand, within BNILDI_05410at 1071.386 kb on - strand, within BNILDI_05410at 1071.438 kb on + strandat 1071.439 kb on - strandat 1071.439 kb on - strandat 1071.616 kb on + strand, within BNILDI_05415at 1071.617 kb on - strand, within BNILDI_05415at 1071.617 kb on - strand, within BNILDI_05415at 1071.736 kb on + strandat 1071.763 kb on - strandat 1071.830 kb on + strandat 1071.994 kb on + strandat 1071.994 kb on + strandat 1072.146 kb on - strandat 1072.149 kb on - strandat 1072.329 kb on - strandat 1072.349 kb on - strandat 1072.361 kb on + strandat 1072.497 kb on - strand, within yiiEat 1072.559 kb on + strandat 1072.652 kb on + strandat 1072.653 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,070,474 + BNILDI_05405 0.51 -1.3
1,070,476 + BNILDI_05405 0.52 +0.1
1,070,476 + BNILDI_05405 0.52 -1.8
1,070,476 + BNILDI_05405 0.52 +0.2
1,070,476 + BNILDI_05405 0.52 +0.0
1,070,477 - BNILDI_05405 0.52 -1.6
1,070,477 - BNILDI_05405 0.52 +0.1
1,070,477 - BNILDI_05405 0.52 -0.6
1,070,477 - BNILDI_05405 0.52 +0.6
1,070,519 + BNILDI_05405 0.56 -0.1
1,070,520 - BNILDI_05405 0.57 -0.1
1,070,563 + BNILDI_05405 0.61 -0.1
1,070,563 + BNILDI_05405 0.61 -1.0
1,070,564 - BNILDI_05405 0.61 -0.9
1,070,564 - BNILDI_05405 0.61 -1.9
1,070,564 - BNILDI_05405 0.61 -1.2
1,070,617 - BNILDI_05405 0.67 -0.2
1,070,679 + BNILDI_05405 0.74 -0.7
1,070,679 + BNILDI_05405 0.74 +0.0
1,070,682 + BNILDI_05405 0.74 -1.2
1,070,683 - BNILDI_05405 0.74 +1.1
1,070,690 + BNILDI_05405 0.75 -0.2
1,070,702 + BNILDI_05405 0.77 -0.7
1,070,703 - BNILDI_05405 0.77 +0.1
1,070,729 + BNILDI_05405 0.80 +1.5
1,070,735 + BNILDI_05405 0.80 +0.3
1,070,735 + BNILDI_05405 0.80 -0.2
1,070,767 + BNILDI_05405 0.84 -1.4
1,070,767 + BNILDI_05405 0.84 +0.3
1,070,768 - BNILDI_05405 0.84 +1.0
1,070,768 - BNILDI_05405 0.84 +1.0
1,070,771 + BNILDI_05405 0.84 +0.2
1,070,771 + BNILDI_05405 0.84 -3.5
1,070,814 + BNILDI_05405 0.89 -1.5
1,070,815 - BNILDI_05405 0.89 -0.5
1,070,815 - BNILDI_05405 0.89 -0.6
1,070,917 + -0.4
1,070,917 + +0.6
1,070,917 + -0.4
1,070,917 + -0.6
1,070,917 + -0.7
1,070,951 - +1.3
1,071,065 - -1.0
1,071,065 - -0.9
1,071,070 + +0.4
1,071,076 - -0.3
1,071,076 - +1.9
1,071,076 - -0.3
1,071,138 + +0.1
1,071,255 + BNILDI_05410 0.36 +0.1
1,071,255 + BNILDI_05410 0.36 +0.1
1,071,255 + BNILDI_05410 0.36 -0.7
1,071,255 + BNILDI_05410 0.36 -0.9
1,071,255 + BNILDI_05410 0.36 +0.0
1,071,255 + BNILDI_05410 0.36 -0.8
1,071,256 - BNILDI_05410 0.36 +0.0
1,071,256 - BNILDI_05410 0.36 +0.4
1,071,258 + BNILDI_05410 0.37 -0.2
1,071,259 - BNILDI_05410 0.37 -1.2
1,071,331 + BNILDI_05410 0.60 -0.2
1,071,335 + BNILDI_05410 0.62 -0.2
1,071,336 - BNILDI_05410 0.62 -1.6
1,071,336 - BNILDI_05410 0.62 +0.9
1,071,349 + BNILDI_05410 0.66 -0.8
1,071,356 + BNILDI_05410 0.68 +0.9
1,071,386 - BNILDI_05410 0.78 +0.6
1,071,438 + +1.2
1,071,439 - +0.5
1,071,439 - +0.3
1,071,616 + BNILDI_05415 0.55 -0.9
1,071,617 - BNILDI_05415 0.56 +0.2
1,071,617 - BNILDI_05415 0.56 -0.5
1,071,736 + -0.0
1,071,763 - -1.0
1,071,830 + +0.4
1,071,994 + -0.2
1,071,994 + +0.3
1,072,146 - +1.9
1,072,149 - +0.3
1,072,329 - +1.0
1,072,349 - -0.6
1,072,361 + +1.5
1,072,497 - yiiE BNILDI_05425 0.67 -0.2
1,072,559 + -1.7
1,072,652 + +0.3
1,072,653 - -1.1

Or see this region's nucleotide sequence