Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_05405 and BNILDI_05410 are separated by 228 nucleotides BNILDI_05410 and BNILDI_05415 are separated by 0 nucleotides BNILDI_05415 and BNILDI_05420 are separated by 85 nucleotides BNILDI_05420 and yiiE are separated by 426 nucleotides
BNILDI_05405: BNILDI_05405 - alpha/beta hydrolase, at 1,070,006 to 1,070,914
_05405
BNILDI_05410: BNILDI_05410 - Toxin HigB-2, at 1,071,143 to 1,071,454
_05410
BNILDI_05415: BNILDI_05415 - transcriptional regulator, at 1,071,455 to 1,071,745
_05415
BNILDI_05420: BNILDI_05420 - hypothetical protein, at 1,071,831 to 1,071,923
_05420
BNILDI_05425: yiiE - Uncharacterized protein YiiE, at 1,072,350 to 1,072,568
yiiE
Position (kb)
1071
1072 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1070.474 kb on + strand, within BNILDI_05405 at 1070.476 kb on + strand, within BNILDI_05405 at 1070.476 kb on + strand, within BNILDI_05405 at 1070.476 kb on + strand, within BNILDI_05405 at 1070.476 kb on + strand, within BNILDI_05405 at 1070.477 kb on - strand, within BNILDI_05405 at 1070.477 kb on - strand, within BNILDI_05405 at 1070.477 kb on - strand, within BNILDI_05405 at 1070.477 kb on - strand, within BNILDI_05405 at 1070.519 kb on + strand, within BNILDI_05405 at 1070.520 kb on - strand, within BNILDI_05405 at 1070.563 kb on + strand, within BNILDI_05405 at 1070.563 kb on + strand, within BNILDI_05405 at 1070.564 kb on - strand, within BNILDI_05405 at 1070.564 kb on - strand, within BNILDI_05405 at 1070.564 kb on - strand, within BNILDI_05405 at 1070.617 kb on - strand, within BNILDI_05405 at 1070.679 kb on + strand, within BNILDI_05405 at 1070.679 kb on + strand, within BNILDI_05405 at 1070.682 kb on + strand, within BNILDI_05405 at 1070.683 kb on - strand, within BNILDI_05405 at 1070.690 kb on + strand, within BNILDI_05405 at 1070.702 kb on + strand, within BNILDI_05405 at 1070.703 kb on - strand, within BNILDI_05405 at 1070.729 kb on + strand, within BNILDI_05405 at 1070.735 kb on + strand, within BNILDI_05405 at 1070.735 kb on + strand, within BNILDI_05405 at 1070.767 kb on + strand, within BNILDI_05405 at 1070.767 kb on + strand, within BNILDI_05405 at 1070.768 kb on - strand, within BNILDI_05405 at 1070.768 kb on - strand, within BNILDI_05405 at 1070.771 kb on + strand, within BNILDI_05405 at 1070.771 kb on + strand, within BNILDI_05405 at 1070.814 kb on + strand, within BNILDI_05405 at 1070.815 kb on - strand, within BNILDI_05405 at 1070.815 kb on - strand, within BNILDI_05405 at 1070.917 kb on + strand at 1070.917 kb on + strand at 1070.917 kb on + strand at 1070.917 kb on + strand at 1070.917 kb on + strand at 1070.951 kb on - strand at 1071.065 kb on - strand at 1071.065 kb on - strand at 1071.070 kb on + strand at 1071.076 kb on - strand at 1071.076 kb on - strand at 1071.076 kb on - strand at 1071.138 kb on + strand at 1071.255 kb on + strand, within BNILDI_05410 at 1071.255 kb on + strand, within BNILDI_05410 at 1071.255 kb on + strand, within BNILDI_05410 at 1071.255 kb on + strand, within BNILDI_05410 at 1071.255 kb on + strand, within BNILDI_05410 at 1071.255 kb on + strand, within BNILDI_05410 at 1071.256 kb on - strand, within BNILDI_05410 at 1071.256 kb on - strand, within BNILDI_05410 at 1071.258 kb on + strand, within BNILDI_05410 at 1071.259 kb on - strand, within BNILDI_05410 at 1071.331 kb on + strand, within BNILDI_05410 at 1071.335 kb on + strand, within BNILDI_05410 at 1071.336 kb on - strand, within BNILDI_05410 at 1071.336 kb on - strand, within BNILDI_05410 at 1071.349 kb on + strand, within BNILDI_05410 at 1071.356 kb on + strand, within BNILDI_05410 at 1071.386 kb on - strand, within BNILDI_05410 at 1071.438 kb on + strand at 1071.439 kb on - strand at 1071.439 kb on - strand at 1071.616 kb on + strand, within BNILDI_05415 at 1071.617 kb on - strand, within BNILDI_05415 at 1071.617 kb on - strand, within BNILDI_05415 at 1071.736 kb on + strand at 1071.763 kb on - strand at 1071.830 kb on + strand at 1071.994 kb on + strand at 1071.994 kb on + strand at 1072.146 kb on - strand at 1072.149 kb on - strand at 1072.329 kb on - strand at 1072.349 kb on - strand at 1072.361 kb on + strand at 1072.497 kb on - strand, within yiiE at 1072.559 kb on + strand at 1072.652 kb on + strand at 1072.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,070,474 + BNILDI_05405 0.51 -1.3 1,070,476 + BNILDI_05405 0.52 +0.1 1,070,476 + BNILDI_05405 0.52 -1.8 1,070,476 + BNILDI_05405 0.52 +0.2 1,070,476 + BNILDI_05405 0.52 +0.0 1,070,477 - BNILDI_05405 0.52 -1.6 1,070,477 - BNILDI_05405 0.52 +0.1 1,070,477 - BNILDI_05405 0.52 -0.6 1,070,477 - BNILDI_05405 0.52 +0.6 1,070,519 + BNILDI_05405 0.56 -0.1 1,070,520 - BNILDI_05405 0.57 -0.1 1,070,563 + BNILDI_05405 0.61 -0.1 1,070,563 + BNILDI_05405 0.61 -1.0 1,070,564 - BNILDI_05405 0.61 -0.9 1,070,564 - BNILDI_05405 0.61 -1.9 1,070,564 - BNILDI_05405 0.61 -1.2 1,070,617 - BNILDI_05405 0.67 -0.2 1,070,679 + BNILDI_05405 0.74 -0.7 1,070,679 + BNILDI_05405 0.74 +0.0 1,070,682 + BNILDI_05405 0.74 -1.2 1,070,683 - BNILDI_05405 0.74 +1.1 1,070,690 + BNILDI_05405 0.75 -0.2 1,070,702 + BNILDI_05405 0.77 -0.7 1,070,703 - BNILDI_05405 0.77 +0.1 1,070,729 + BNILDI_05405 0.80 +1.5 1,070,735 + BNILDI_05405 0.80 +0.3 1,070,735 + BNILDI_05405 0.80 -0.2 1,070,767 + BNILDI_05405 0.84 -1.4 1,070,767 + BNILDI_05405 0.84 +0.3 1,070,768 - BNILDI_05405 0.84 +1.0 1,070,768 - BNILDI_05405 0.84 +1.0 1,070,771 + BNILDI_05405 0.84 +0.2 1,070,771 + BNILDI_05405 0.84 -3.5 1,070,814 + BNILDI_05405 0.89 -1.5 1,070,815 - BNILDI_05405 0.89 -0.5 1,070,815 - BNILDI_05405 0.89 -0.6 1,070,917 + -0.4 1,070,917 + +0.6 1,070,917 + -0.4 1,070,917 + -0.6 1,070,917 + -0.7 1,070,951 - +1.3 1,071,065 - -1.0 1,071,065 - -0.9 1,071,070 + +0.4 1,071,076 - -0.3 1,071,076 - +1.9 1,071,076 - -0.3 1,071,138 + +0.1 1,071,255 + BNILDI_05410 0.36 +0.1 1,071,255 + BNILDI_05410 0.36 +0.1 1,071,255 + BNILDI_05410 0.36 -0.7 1,071,255 + BNILDI_05410 0.36 -0.9 1,071,255 + BNILDI_05410 0.36 +0.0 1,071,255 + BNILDI_05410 0.36 -0.8 1,071,256 - BNILDI_05410 0.36 +0.0 1,071,256 - BNILDI_05410 0.36 +0.4 1,071,258 + BNILDI_05410 0.37 -0.2 1,071,259 - BNILDI_05410 0.37 -1.2 1,071,331 + BNILDI_05410 0.60 -0.2 1,071,335 + BNILDI_05410 0.62 -0.2 1,071,336 - BNILDI_05410 0.62 -1.6 1,071,336 - BNILDI_05410 0.62 +0.9 1,071,349 + BNILDI_05410 0.66 -0.8 1,071,356 + BNILDI_05410 0.68 +0.9 1,071,386 - BNILDI_05410 0.78 +0.6 1,071,438 + +1.2 1,071,439 - +0.5 1,071,439 - +0.3 1,071,616 + BNILDI_05415 0.55 -0.9 1,071,617 - BNILDI_05415 0.56 +0.2 1,071,617 - BNILDI_05415 0.56 -0.5 1,071,736 + -0.0 1,071,763 - -1.0 1,071,830 + +0.4 1,071,994 + -0.2 1,071,994 + +0.3 1,072,146 - +1.9 1,072,149 - +0.3 1,072,329 - +1.0 1,072,349 - -0.6 1,072,361 + +1.5 1,072,497 - yiiE BNILDI_05425 0.67 -0.2 1,072,559 + -1.7 1,072,652 + +0.3 1,072,653 - -1.1
Or see this region's nucleotide sequence