Strain Fitness in Escherichia coli ECRC62 around BNILDI_05290

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemN and BNILDI_05285 are separated by 189 nucleotidesBNILDI_05285 and glnG are separated by 111 nucleotidesglnG and glnL are separated by 11 nucleotides BNILDI_05280: hemN - oxygen-independent coproporphyrinogen III oxidase, at 1,043,700 to 1,045,073 hemN BNILDI_05285: BNILDI_05285 - Uncharacterized protein YshB, at 1,045,263 to 1,045,373 _05285 BNILDI_05290: glnG - nitrogen regulation protein NR(I), at 1,045,485 to 1,046,894 glnG BNILDI_05295: glnL - nitrogen regulation protein NR(II), at 1,046,906 to 1,047,955 glnL Position (kb) 1045 1046 1047Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1044.637 kb on - strand, within hemNat 1044.735 kb on + strand, within hemNat 1044.738 kb on + strand, within hemNat 1044.739 kb on - strand, within hemNat 1044.967 kb on + strandat 1044.968 kb on - strandat 1045.026 kb on + strandat 1045.094 kb on + strandat 1045.356 kb on - strand, within BNILDI_05285at 1045.425 kb on + strandat 1045.433 kb on - strandat 1045.507 kb on - strandat 1045.574 kb on + strandat 1045.715 kb on + strand, within glnGat 1045.878 kb on + strand, within glnGat 1045.891 kb on - strand, within glnGat 1045.944 kb on - strand, within glnGat 1046.022 kb on - strand, within glnGat 1046.022 kb on - strand, within glnGat 1046.165 kb on + strand, within glnGat 1046.188 kb on - strand, within glnGat 1046.188 kb on - strand, within glnGat 1046.192 kb on + strand, within glnGat 1046.192 kb on + strand, within glnGat 1046.231 kb on + strand, within glnGat 1046.298 kb on - strand, within glnGat 1046.411 kb on + strand, within glnGat 1046.411 kb on + strand, within glnGat 1046.411 kb on + strand, within glnGat 1046.412 kb on - strand, within glnGat 1046.439 kb on - strand, within glnGat 1046.505 kb on - strand, within glnGat 1046.688 kb on - strand, within glnGat 1046.688 kb on - strand, within glnGat 1046.726 kb on + strand, within glnGat 1046.733 kb on - strand, within glnGat 1046.778 kb on + strandat 1046.779 kb on - strandat 1046.805 kb on - strandat 1046.812 kb on - strandat 1046.858 kb on + strandat 1046.894 kb on + strandat 1046.907 kb on + strandat 1046.907 kb on + strandat 1046.908 kb on - strandat 1046.917 kb on + strandat 1047.095 kb on - strand, within glnLat 1047.095 kb on - strand, within glnLat 1047.140 kb on + strand, within glnLat 1047.223 kb on + strand, within glnLat 1047.361 kb on + strand, within glnLat 1047.454 kb on + strand, within glnLat 1047.455 kb on - strand, within glnLat 1047.457 kb on - strand, within glnLat 1047.512 kb on + strand, within glnLat 1047.512 kb on + strand, within glnLat 1047.590 kb on + strand, within glnLat 1047.590 kb on + strand, within glnLat 1047.591 kb on - strand, within glnLat 1047.770 kb on - strand, within glnLat 1047.784 kb on - strand, within glnLat 1047.808 kb on + strand, within glnL

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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1,044,637 - hemN BNILDI_05280 0.68 -0.2
1,044,735 + hemN BNILDI_05280 0.75 -0.1
1,044,738 + hemN BNILDI_05280 0.76 -0.6
1,044,739 - hemN BNILDI_05280 0.76 +0.4
1,044,967 + -1.5
1,044,968 - -0.5
1,045,026 + -0.5
1,045,094 + +0.4
1,045,356 - BNILDI_05285 0.84 +0.5
1,045,425 + +0.2
1,045,433 - +0.3
1,045,507 - +0.4
1,045,574 + +0.8
1,045,715 + glnG BNILDI_05290 0.16 +0.7
1,045,878 + glnG BNILDI_05290 0.28 -1.0
1,045,891 - glnG BNILDI_05290 0.29 -0.9
1,045,944 - glnG BNILDI_05290 0.33 +0.3
1,046,022 - glnG BNILDI_05290 0.38 +0.3
1,046,022 - glnG BNILDI_05290 0.38 +0.5
1,046,165 + glnG BNILDI_05290 0.48 +0.4
1,046,188 - glnG BNILDI_05290 0.50 -0.2
1,046,188 - glnG BNILDI_05290 0.50 -0.3
1,046,192 + glnG BNILDI_05290 0.50 +0.2
1,046,192 + glnG BNILDI_05290 0.50 -1.3
1,046,231 + glnG BNILDI_05290 0.53 +0.0
1,046,298 - glnG BNILDI_05290 0.58 -0.9
1,046,411 + glnG BNILDI_05290 0.66 -0.5
1,046,411 + glnG BNILDI_05290 0.66 -0.5
1,046,411 + glnG BNILDI_05290 0.66 +0.0
1,046,412 - glnG BNILDI_05290 0.66 +1.3
1,046,439 - glnG BNILDI_05290 0.68 +2.3
1,046,505 - glnG BNILDI_05290 0.72 +0.2
1,046,688 - glnG BNILDI_05290 0.85 -0.3
1,046,688 - glnG BNILDI_05290 0.85 -0.4
1,046,726 + glnG BNILDI_05290 0.88 -0.5
1,046,733 - glnG BNILDI_05290 0.89 -0.1
1,046,778 + -0.8
1,046,779 - -0.5
1,046,805 - +0.1
1,046,812 - +0.3
1,046,858 + -0.1
1,046,894 + +0.1
1,046,907 + -2.8
1,046,907 + +1.2
1,046,908 - +0.3
1,046,917 + -0.0
1,047,095 - glnL BNILDI_05295 0.18 +0.2
1,047,095 - glnL BNILDI_05295 0.18 -0.8
1,047,140 + glnL BNILDI_05295 0.22 -0.4
1,047,223 + glnL BNILDI_05295 0.30 -1.5
1,047,361 + glnL BNILDI_05295 0.43 -0.1
1,047,454 + glnL BNILDI_05295 0.52 +0.7
1,047,455 - glnL BNILDI_05295 0.52 -1.8
1,047,457 - glnL BNILDI_05295 0.52 -0.9
1,047,512 + glnL BNILDI_05295 0.58 -0.3
1,047,512 + glnL BNILDI_05295 0.58 -0.1
1,047,590 + glnL BNILDI_05295 0.65 +0.6
1,047,590 + glnL BNILDI_05295 0.65 +0.1
1,047,591 - glnL BNILDI_05295 0.65 -0.5
1,047,770 - glnL BNILDI_05295 0.82 -0.1
1,047,784 - glnL BNILDI_05295 0.84 -1.1
1,047,808 + glnL BNILDI_05295 0.86 -0.0

Or see this region's nucleotide sequence