Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemN and BNILDI_05285 are separated by 189 nucleotides BNILDI_05285 and glnG are separated by 111 nucleotides glnG and glnL are separated by 11 nucleotides
BNILDI_05280: hemN - oxygen-independent coproporphyrinogen III oxidase, at 1,043,700 to 1,045,073
hemN
BNILDI_05285: BNILDI_05285 - Uncharacterized protein YshB, at 1,045,263 to 1,045,373
_05285
BNILDI_05290: glnG - nitrogen regulation protein NR(I), at 1,045,485 to 1,046,894
glnG
BNILDI_05295: glnL - nitrogen regulation protein NR(II), at 1,046,906 to 1,047,955
glnL
Position (kb)
1045
1046
1047 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1044.637 kb on - strand, within hemN at 1044.735 kb on + strand, within hemN at 1044.738 kb on + strand, within hemN at 1044.739 kb on - strand, within hemN at 1044.967 kb on + strand at 1044.968 kb on - strand at 1045.026 kb on + strand at 1045.094 kb on + strand at 1045.356 kb on - strand, within BNILDI_05285 at 1045.425 kb on + strand at 1045.433 kb on - strand at 1045.507 kb on - strand at 1045.574 kb on + strand at 1045.715 kb on + strand, within glnG at 1045.878 kb on + strand, within glnG at 1045.891 kb on - strand, within glnG at 1045.944 kb on - strand, within glnG at 1046.022 kb on - strand, within glnG at 1046.022 kb on - strand, within glnG at 1046.165 kb on + strand, within glnG at 1046.188 kb on - strand, within glnG at 1046.188 kb on - strand, within glnG at 1046.192 kb on + strand, within glnG at 1046.192 kb on + strand, within glnG at 1046.231 kb on + strand, within glnG at 1046.298 kb on - strand, within glnG at 1046.411 kb on + strand, within glnG at 1046.411 kb on + strand, within glnG at 1046.411 kb on + strand, within glnG at 1046.412 kb on - strand, within glnG at 1046.439 kb on - strand, within glnG at 1046.505 kb on - strand, within glnG at 1046.688 kb on - strand, within glnG at 1046.688 kb on - strand, within glnG at 1046.726 kb on + strand, within glnG at 1046.733 kb on - strand, within glnG at 1046.778 kb on + strand at 1046.779 kb on - strand at 1046.805 kb on - strand at 1046.812 kb on - strand at 1046.858 kb on + strand at 1046.894 kb on + strand at 1046.907 kb on + strand at 1046.907 kb on + strand at 1046.908 kb on - strand at 1046.917 kb on + strand at 1047.095 kb on - strand, within glnL at 1047.095 kb on - strand, within glnL at 1047.140 kb on + strand, within glnL at 1047.223 kb on + strand, within glnL at 1047.361 kb on + strand, within glnL at 1047.454 kb on + strand, within glnL at 1047.455 kb on - strand, within glnL at 1047.457 kb on - strand, within glnL at 1047.512 kb on + strand, within glnL at 1047.512 kb on + strand, within glnL at 1047.590 kb on + strand, within glnL at 1047.590 kb on + strand, within glnL at 1047.591 kb on - strand, within glnL at 1047.770 kb on - strand, within glnL at 1047.784 kb on - strand, within glnL at 1047.808 kb on + strand, within glnL
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 1,044,637 - hemN BNILDI_05280 0.68 -0.2 1,044,735 + hemN BNILDI_05280 0.75 -0.1 1,044,738 + hemN BNILDI_05280 0.76 -0.6 1,044,739 - hemN BNILDI_05280 0.76 +0.4 1,044,967 + -1.5 1,044,968 - -0.5 1,045,026 + -0.5 1,045,094 + +0.4 1,045,356 - BNILDI_05285 0.84 +0.5 1,045,425 + +0.2 1,045,433 - +0.3 1,045,507 - +0.4 1,045,574 + +0.8 1,045,715 + glnG BNILDI_05290 0.16 +0.7 1,045,878 + glnG BNILDI_05290 0.28 -1.0 1,045,891 - glnG BNILDI_05290 0.29 -0.9 1,045,944 - glnG BNILDI_05290 0.33 +0.3 1,046,022 - glnG BNILDI_05290 0.38 +0.3 1,046,022 - glnG BNILDI_05290 0.38 +0.5 1,046,165 + glnG BNILDI_05290 0.48 +0.4 1,046,188 - glnG BNILDI_05290 0.50 -0.2 1,046,188 - glnG BNILDI_05290 0.50 -0.3 1,046,192 + glnG BNILDI_05290 0.50 +0.2 1,046,192 + glnG BNILDI_05290 0.50 -1.3 1,046,231 + glnG BNILDI_05290 0.53 +0.0 1,046,298 - glnG BNILDI_05290 0.58 -0.9 1,046,411 + glnG BNILDI_05290 0.66 -0.5 1,046,411 + glnG BNILDI_05290 0.66 -0.5 1,046,411 + glnG BNILDI_05290 0.66 +0.0 1,046,412 - glnG BNILDI_05290 0.66 +1.3 1,046,439 - glnG BNILDI_05290 0.68 +2.3 1,046,505 - glnG BNILDI_05290 0.72 +0.2 1,046,688 - glnG BNILDI_05290 0.85 -0.3 1,046,688 - glnG BNILDI_05290 0.85 -0.4 1,046,726 + glnG BNILDI_05290 0.88 -0.5 1,046,733 - glnG BNILDI_05290 0.89 -0.1 1,046,778 + -0.8 1,046,779 - -0.5 1,046,805 - +0.1 1,046,812 - +0.3 1,046,858 + -0.1 1,046,894 + +0.1 1,046,907 + -2.8 1,046,907 + +1.2 1,046,908 - +0.3 1,046,917 + -0.0 1,047,095 - glnL BNILDI_05295 0.18 +0.2 1,047,095 - glnL BNILDI_05295 0.18 -0.8 1,047,140 + glnL BNILDI_05295 0.22 -0.4 1,047,223 + glnL BNILDI_05295 0.30 -1.5 1,047,361 + glnL BNILDI_05295 0.43 -0.1 1,047,454 + glnL BNILDI_05295 0.52 +0.7 1,047,455 - glnL BNILDI_05295 0.52 -1.8 1,047,457 - glnL BNILDI_05295 0.52 -0.9 1,047,512 + glnL BNILDI_05295 0.58 -0.3 1,047,512 + glnL BNILDI_05295 0.58 -0.1 1,047,590 + glnL BNILDI_05295 0.65 +0.6 1,047,590 + glnL BNILDI_05295 0.65 +0.1 1,047,591 - glnL BNILDI_05295 0.65 -0.5 1,047,770 - glnL BNILDI_05295 0.82 -0.1 1,047,784 - glnL BNILDI_05295 0.84 -1.1 1,047,808 + glnL BNILDI_05295 0.86 -0.0
Or see this region's nucleotide sequence