Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_04900 and BNILDI_04905 overlap by 61 nucleotides BNILDI_04905 and hemY are separated by 678 nucleotides hemY and hemX are separated by 2 nucleotides
BNILDI_04900: BNILDI_04900 - IS4-like element ISVsa5 family transposase, at 971,272 to 972,480
_04900
BNILDI_04905: BNILDI_04905 - hypothetical protein, at 972,420 to 972,701
_04905
BNILDI_04925: hemY - protoheme IX biogenesis protein HemY, at 973,380 to 974,576
hemY
BNILDI_04930: hemX - uroporphyrinogen-III C-methyltransferase, at 974,579 to 975,784
hemX
Position (kb) 973
974
975 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 972.741 kb on - strand at 972.884 kb on - strand at 972.992 kb on + strand at 972.992 kb on + strand at 973.016 kb on - strand at 973.035 kb on + strand at 973.127 kb on + strand at 973.127 kb on + strand at 973.148 kb on - strand at 973.228 kb on + strand at 973.284 kb on + strand at 973.285 kb on - strand at 973.332 kb on + strand at 973.382 kb on - strand at 973.382 kb on - strand at 973.382 kb on - strand at 973.684 kb on - strand, within hemY at 973.830 kb on - strand, within hemY at 973.844 kb on + strand, within hemY at 973.988 kb on - strand, within hemY at 974.007 kb on + strand, within hemY at 974.011 kb on - strand, within hemY at 974.097 kb on + strand, within hemY at 974.097 kb on + strand, within hemY at 974.098 kb on - strand, within hemY at 974.098 kb on - strand, within hemY at 974.098 kb on - strand, within hemY at 974.211 kb on + strand, within hemY at 974.215 kb on + strand, within hemY at 974.215 kb on + strand, within hemY at 974.215 kb on + strand, within hemY at 974.395 kb on - strand, within hemY at 974.418 kb on + strand, within hemY at 974.419 kb on - strand, within hemY at 974.473 kb on + strand at 974.473 kb on + strand at 974.473 kb on + strand at 974.474 kb on - strand at 974.474 kb on - strand at 974.474 kb on - strand at 974.581 kb on - strand at 974.770 kb on + strand, within hemX at 974.783 kb on + strand, within hemX at 974.784 kb on - strand, within hemX at 974.830 kb on + strand, within hemX at 974.835 kb on + strand, within hemX at 974.835 kb on + strand, within hemX at 974.838 kb on + strand, within hemX at 974.838 kb on + strand, within hemX at 974.952 kb on + strand, within hemX at 974.953 kb on - strand, within hemX at 974.953 kb on - strand, within hemX at 974.953 kb on - strand, within hemX at 974.957 kb on - strand, within hemX at 975.011 kb on - strand, within hemX at 975.011 kb on - strand, within hemX
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 972,741 - -1.3 972,884 - +0.7 972,992 + -0.5 972,992 + +0.2 973,016 - +1.9 973,035 + -1.1 973,127 + +2.8 973,127 + +0.0 973,148 - -0.0 973,228 + -0.5 973,284 + -0.7 973,285 - -0.7 973,332 + +1.1 973,382 - -1.1 973,382 - +0.7 973,382 - -0.2 973,684 - hemY BNILDI_04925 0.25 +0.2 973,830 - hemY BNILDI_04925 0.38 +0.3 973,844 + hemY BNILDI_04925 0.39 -1.4 973,988 - hemY BNILDI_04925 0.51 -0.4 974,007 + hemY BNILDI_04925 0.52 -0.4 974,011 - hemY BNILDI_04925 0.53 +0.4 974,097 + hemY BNILDI_04925 0.60 -0.0 974,097 + hemY BNILDI_04925 0.60 -1.7 974,098 - hemY BNILDI_04925 0.60 -1.9 974,098 - hemY BNILDI_04925 0.60 +0.4 974,098 - hemY BNILDI_04925 0.60 +1.1 974,211 + hemY BNILDI_04925 0.69 +0.6 974,215 + hemY BNILDI_04925 0.70 +0.2 974,215 + hemY BNILDI_04925 0.70 -1.6 974,215 + hemY BNILDI_04925 0.70 -1.1 974,395 - hemY BNILDI_04925 0.85 +0.2 974,418 + hemY BNILDI_04925 0.87 +1.3 974,419 - hemY BNILDI_04925 0.87 -0.9 974,473 + +1.3 974,473 + -0.7 974,473 + -0.4 974,474 - -0.4 974,474 - +0.3 974,474 - -1.6 974,581 - -0.3 974,770 + hemX BNILDI_04930 0.16 +0.1 974,783 + hemX BNILDI_04930 0.17 +0.5 974,784 - hemX BNILDI_04930 0.17 +1.3 974,830 + hemX BNILDI_04930 0.21 -0.1 974,835 + hemX BNILDI_04930 0.21 -0.9 974,835 + hemX BNILDI_04930 0.21 -0.1 974,838 + hemX BNILDI_04930 0.21 -0.9 974,838 + hemX BNILDI_04930 0.21 -0.4 974,952 + hemX BNILDI_04930 0.31 +0.3 974,953 - hemX BNILDI_04930 0.31 -0.3 974,953 - hemX BNILDI_04930 0.31 +0.6 974,953 - hemX BNILDI_04930 0.31 -0.6 974,957 - hemX BNILDI_04930 0.31 -3.0 975,011 - hemX BNILDI_04930 0.36 +0.8 975,011 - hemX BNILDI_04930 0.36 -1.6
Or see this region's nucleotide sequence