Strain Fitness in Escherichia coli ECRC62 around BNILDI_04505

Experiment: D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpstA and pstB are separated by 14 nucleotidespstB and pstA are separated by 90 nucleotidespstA and pstC overlap by 1 nucleotides BNILDI_04495: pstA - phosphate ABC transporter permease PstA, at 888,707 to 889,432 pstA BNILDI_04500: pstB - phosphate ABC transporter ATP-binding protein PstB, at 889,447 to 890,220 pstB BNILDI_04505: pstA - phosphate ABC transporter permease PstA, at 890,311 to 891,201 pstA BNILDI_04510: pstC - phosphate ABC transporter permease PstC, at 891,201 to 892,160 pstC Position (kb) 890 891 892Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 889.406 kb on - strandat 889.470 kb on - strandat 890.640 kb on - strand, within pstAat 891.024 kb on + strand, within pstAat 891.055 kb on + strand, within pstAat 891.240 kb on - strandat 891.378 kb on - strand, within pstCat 891.380 kb on - strand, within pstCat 891.380 kb on - strand, within pstCat 891.380 kb on - strand, within pstCat 891.380 kb on - strand, within pstCat 891.404 kb on - strand, within pstCat 891.404 kb on - strand, within pstCat 891.404 kb on - strand, within pstCat 891.519 kb on - strand, within pstCat 891.934 kb on + strand, within pstCat 892.166 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose
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889,406 - +0.7
889,470 - -1.4
890,640 - pstA BNILDI_04505 0.37 -3.0
891,024 + pstA BNILDI_04505 0.80 -2.3
891,055 + pstA BNILDI_04505 0.84 +0.0
891,240 - -2.6
891,378 - pstC BNILDI_04510 0.18 +2.3
891,380 - pstC BNILDI_04510 0.19 +0.0
891,380 - pstC BNILDI_04510 0.19 -0.8
891,380 - pstC BNILDI_04510 0.19 +0.5
891,380 - pstC BNILDI_04510 0.19 -2.7
891,404 - pstC BNILDI_04510 0.21 -0.5
891,404 - pstC BNILDI_04510 0.21 -0.5
891,404 - pstC BNILDI_04510 0.21 -1.4
891,519 - pstC BNILDI_04510 0.33 -1.0
891,934 + pstC BNILDI_04510 0.76 -3.6
892,166 - -1.2

Or see this region's nucleotide sequence