Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yidP and yidE overlap by 4 nucleotides yidE and ibpB are separated by 196 nucleotides ibpB and ibpA are separated by 111 nucleotides
BNILDI_04280: yidP - Uncharacterized HTH-type transcriptional regulator YidP, at 846,376 to 847,092
yidP
BNILDI_04285: yidE - putative transporter, at 847,089 to 848,750
yidE
BNILDI_04290: ibpB - heat shock chaperone IbpB, at 848,947 to 849,375
ibpB
BNILDI_04295: ibpA - heat shock chaperone IbpA, at 849,487 to 849,900
ibpA
Position (kb) 847
848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 846.107 kb on + strand at 846.108 kb on - strand at 846.108 kb on - strand at 846.111 kb on + strand at 846.111 kb on + strand at 846.112 kb on - strand at 846.152 kb on + strand at 846.233 kb on + strand at 846.233 kb on + strand at 846.252 kb on - strand at 846.371 kb on + strand at 846.442 kb on - strand at 846.565 kb on + strand, within yidP at 846.566 kb on - strand, within yidP at 846.566 kb on - strand, within yidP at 846.584 kb on + strand, within yidP at 846.584 kb on + strand, within yidP at 846.584 kb on + strand, within yidP at 846.585 kb on - strand, within yidP at 846.707 kb on + strand, within yidP at 846.733 kb on + strand, within yidP at 846.733 kb on + strand, within yidP at 846.790 kb on + strand, within yidP at 846.790 kb on + strand, within yidP at 846.790 kb on + strand, within yidP at 846.790 kb on + strand, within yidP at 846.790 kb on + strand, within yidP at 846.790 kb on + strand, within yidP at 846.790 kb on + strand, within yidP at 846.790 kb on + strand, within yidP at 846.791 kb on - strand, within yidP at 846.791 kb on - strand, within yidP at 846.791 kb on - strand, within yidP at 846.792 kb on + strand, within yidP at 846.792 kb on + strand, within yidP at 846.855 kb on + strand, within yidP at 846.855 kb on + strand, within yidP at 846.889 kb on - strand, within yidP at 846.892 kb on + strand, within yidP at 846.893 kb on - strand, within yidP at 847.016 kb on - strand, within yidP at 847.097 kb on + strand at 847.160 kb on - strand at 847.171 kb on + strand at 847.208 kb on + strand at 847.208 kb on + strand at 847.313 kb on + strand, within yidE at 847.314 kb on - strand, within yidE at 847.592 kb on + strand, within yidE at 847.592 kb on + strand, within yidE at 847.599 kb on + strand, within yidE at 847.600 kb on - strand, within yidE at 847.625 kb on + strand, within yidE at 847.946 kb on + strand, within yidE at 847.946 kb on + strand, within yidE at 847.951 kb on - strand, within yidE at 847.951 kb on - strand, within yidE at 847.951 kb on - strand, within yidE at 847.951 kb on - strand, within yidE at 848.003 kb on + strand, within yidE at 848.055 kb on - strand, within yidE at 848.109 kb on - strand, within yidE at 848.132 kb on + strand, within yidE at 848.133 kb on - strand, within yidE at 848.414 kb on + strand, within yidE at 848.414 kb on + strand, within yidE at 848.479 kb on - strand, within yidE at 848.534 kb on + strand, within yidE at 848.534 kb on - strand, within yidE at 848.536 kb on + strand, within yidE at 848.589 kb on + strand at 848.589 kb on + strand at 848.590 kb on - strand at 848.590 kb on - strand at 848.590 kb on - strand at 848.655 kb on - strand at 848.658 kb on + strand at 848.658 kb on + strand at 848.659 kb on - strand at 848.664 kb on + strand at 848.739 kb on + strand at 848.739 kb on + strand at 848.740 kb on - strand at 848.740 kb on - strand at 848.825 kb on - strand at 848.860 kb on - strand at 848.899 kb on - strand at 848.940 kb on + strand at 848.940 kb on + strand at 848.940 kb on + strand at 848.945 kb on - strand at 848.945 kb on - strand at 848.945 kb on - strand at 848.948 kb on + strand at 848.948 kb on + strand at 848.952 kb on + strand at 849.166 kb on + strand, within ibpB at 849.272 kb on + strand, within ibpB at 849.391 kb on + strand at 849.391 kb on + strand at 849.403 kb on - strand at 849.407 kb on - strand at 849.407 kb on - strand at 849.430 kb on + strand at 849.489 kb on - strand at 849.548 kb on + strand, within ibpA at 849.549 kb on - strand, within ibpA at 849.549 kb on - strand, within ibpA at 849.549 kb on - strand, within ibpA at 849.563 kb on - strand, within ibpA at 849.641 kb on + strand, within ibpA at 849.647 kb on + strand, within ibpA at 849.647 kb on + strand, within ibpA at 849.647 kb on + strand, within ibpA at 849.648 kb on - strand, within ibpA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 846,107 + +1.2 846,108 - +0.4 846,108 - +0.1 846,111 + +0.3 846,111 + -1.0 846,112 - -0.4 846,152 + -0.7 846,233 + -0.1 846,233 + +0.1 846,252 - +1.2 846,371 + -1.8 846,442 - -0.6 846,565 + yidP BNILDI_04280 0.26 +0.4 846,566 - yidP BNILDI_04280 0.26 -0.3 846,566 - yidP BNILDI_04280 0.26 +0.2 846,584 + yidP BNILDI_04280 0.29 +0.0 846,584 + yidP BNILDI_04280 0.29 -0.1 846,584 + yidP BNILDI_04280 0.29 -0.0 846,585 - yidP BNILDI_04280 0.29 -0.1 846,707 + yidP BNILDI_04280 0.46 -0.0 846,733 + yidP BNILDI_04280 0.50 +0.5 846,733 + yidP BNILDI_04280 0.50 +0.2 846,790 + yidP BNILDI_04280 0.58 +0.2 846,790 + yidP BNILDI_04280 0.58 +0.9 846,790 + yidP BNILDI_04280 0.58 +0.8 846,790 + yidP BNILDI_04280 0.58 +0.1 846,790 + yidP BNILDI_04280 0.58 +0.5 846,790 + yidP BNILDI_04280 0.58 -0.5 846,790 + yidP BNILDI_04280 0.58 +0.1 846,790 + yidP BNILDI_04280 0.58 -1.2 846,791 - yidP BNILDI_04280 0.58 -0.1 846,791 - yidP BNILDI_04280 0.58 +0.3 846,791 - yidP BNILDI_04280 0.58 -0.9 846,792 + yidP BNILDI_04280 0.58 +0.4 846,792 + yidP BNILDI_04280 0.58 +0.5 846,855 + yidP BNILDI_04280 0.67 -0.6 846,855 + yidP BNILDI_04280 0.67 +0.6 846,889 - yidP BNILDI_04280 0.72 +0.7 846,892 + yidP BNILDI_04280 0.72 +1.3 846,893 - yidP BNILDI_04280 0.72 -0.1 847,016 - yidP BNILDI_04280 0.89 -0.0 847,097 + -1.0 847,160 - -0.6 847,171 + -2.7 847,208 + +0.1 847,208 + +0.7 847,313 + yidE BNILDI_04285 0.13 -0.6 847,314 - yidE BNILDI_04285 0.14 +0.5 847,592 + yidE BNILDI_04285 0.30 -0.6 847,592 + yidE BNILDI_04285 0.30 +1.3 847,599 + yidE BNILDI_04285 0.31 -1.0 847,600 - yidE BNILDI_04285 0.31 -0.3 847,625 + yidE BNILDI_04285 0.32 -0.2 847,946 + yidE BNILDI_04285 0.52 -0.4 847,946 + yidE BNILDI_04285 0.52 -1.0 847,951 - yidE BNILDI_04285 0.52 -0.3 847,951 - yidE BNILDI_04285 0.52 -3.1 847,951 - yidE BNILDI_04285 0.52 -0.4 847,951 - yidE BNILDI_04285 0.52 -0.5 848,003 + yidE BNILDI_04285 0.55 -0.2 848,055 - yidE BNILDI_04285 0.58 +0.0 848,109 - yidE BNILDI_04285 0.61 -1.5 848,132 + yidE BNILDI_04285 0.63 +0.5 848,133 - yidE BNILDI_04285 0.63 +0.1 848,414 + yidE BNILDI_04285 0.80 +0.2 848,414 + yidE BNILDI_04285 0.80 -0.9 848,479 - yidE BNILDI_04285 0.84 +1.6 848,534 + yidE BNILDI_04285 0.87 -0.4 848,534 - yidE BNILDI_04285 0.87 -0.4 848,536 + yidE BNILDI_04285 0.87 -1.5 848,589 + +1.3 848,589 + -0.5 848,590 - -0.2 848,590 - +0.7 848,590 - +0.5 848,655 - -0.8 848,658 + -0.1 848,658 + -0.2 848,659 - -0.3 848,664 + -0.5 848,739 + +1.9 848,739 + +0.6 848,740 - +0.6 848,740 - +0.8 848,825 - -0.1 848,860 - -0.8 848,899 - -0.2 848,940 + +0.1 848,940 + -0.2 848,940 + +0.8 848,945 - -0.1 848,945 - +0.0 848,945 - -1.5 848,948 + -0.7 848,948 + +0.6 848,952 + -0.5 849,166 + ibpB BNILDI_04290 0.51 +1.0 849,272 + ibpB BNILDI_04290 0.76 +1.4 849,391 + +0.7 849,391 + -0.7 849,403 - +0.4 849,407 - -0.4 849,407 - -2.3 849,430 + +0.1 849,489 - +0.2 849,548 + ibpA BNILDI_04295 0.15 -0.3 849,549 - ibpA BNILDI_04295 0.15 -0.1 849,549 - ibpA BNILDI_04295 0.15 -0.2 849,549 - ibpA BNILDI_04295 0.15 -0.4 849,563 - ibpA BNILDI_04295 0.18 -0.9 849,641 + ibpA BNILDI_04295 0.37 -0.6 849,647 + ibpA BNILDI_04295 0.39 +0.1 849,647 + ibpA BNILDI_04295 0.39 +0.4 849,647 + ibpA BNILDI_04295 0.39 -0.5 849,648 - ibpA BNILDI_04295 0.39 -0.2
Or see this region's nucleotide sequence