Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_04200 and ivbL are separated by 105 nucleotides ivbL and tisB are separated by 564 nucleotides tisB and ysdE are separated by 262 nucleotides
BNILDI_04200: BNILDI_04200 - Acetolactate synthase, at 833,432 to 835,120
_04200
BNILDI_04205: ivbL - ilvB operon leader peptide IvbL, at 835,226 to 835,324
ivbL
BNILDI_04215: tisB - Small toxic protein TisB, at 835,889 to 835,978
tisB
BNILDI_04220: ysdE - Protein YsdE, at 836,241 to 836,315
ysdE
Position (kb) 835
836 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 834.307 kb on + strand, within BNILDI_04200 at 834.309 kb on + strand, within BNILDI_04200 at 834.309 kb on + strand, within BNILDI_04200 at 834.310 kb on - strand, within BNILDI_04200 at 834.310 kb on - strand, within BNILDI_04200 at 834.705 kb on + strand, within BNILDI_04200 at 834.706 kb on - strand, within BNILDI_04200 at 834.739 kb on - strand, within BNILDI_04200 at 835.007 kb on - strand at 835.036 kb on + strand at 835.036 kb on + strand at 835.037 kb on - strand at 835.037 kb on - strand at 835.037 kb on - strand at 835.066 kb on + strand at 835.091 kb on - strand at 835.164 kb on - strand at 835.296 kb on - strand, within ivbL at 835.318 kb on + strand at 835.350 kb on - strand at 835.355 kb on + strand at 835.361 kb on + strand at 835.362 kb on - strand at 835.518 kb on - strand at 835.520 kb on + strand at 835.662 kb on - strand at 835.664 kb on - strand at 835.675 kb on - strand at 835.687 kb on - strand at 835.717 kb on + strand at 835.718 kb on - strand at 835.778 kb on + strand at 835.778 kb on + strand at 835.778 kb on + strand at 835.849 kb on + strand at 835.850 kb on - strand at 835.889 kb on - strand at 835.889 kb on - strand at 835.889 kb on - strand at 836.028 kb on + strand at 836.029 kb on - strand at 836.032 kb on + strand at 836.033 kb on - strand at 836.152 kb on + strand at 836.153 kb on - strand at 836.242 kb on + strand at 836.262 kb on + strand, within ysdE at 836.296 kb on + strand, within ysdE at 836.299 kb on - strand, within ysdE
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 834,307 + BNILDI_04200 0.52 -0.8 834,309 + BNILDI_04200 0.52 -0.5 834,309 + BNILDI_04200 0.52 +0.7 834,310 - BNILDI_04200 0.52 +0.6 834,310 - BNILDI_04200 0.52 -2.5 834,705 + BNILDI_04200 0.75 -1.2 834,706 - BNILDI_04200 0.75 -0.8 834,739 - BNILDI_04200 0.77 -0.5 835,007 - -0.4 835,036 + +0.4 835,036 + -1.0 835,037 - -0.2 835,037 - -0.5 835,037 - -0.4 835,066 + +0.3 835,091 - +0.1 835,164 - +1.1 835,296 - ivbL BNILDI_04205 0.71 -2.2 835,318 + -0.7 835,350 - +1.5 835,355 + -2.6 835,361 + -1.4 835,362 - -0.3 835,518 - +0.1 835,520 + +0.1 835,662 - +0.6 835,664 - +0.3 835,675 - -0.7 835,687 - +1.2 835,717 + -0.1 835,718 - +0.1 835,778 + +1.7 835,778 + +0.2 835,778 + -0.4 835,849 + +1.0 835,850 - -0.4 835,889 - +0.1 835,889 - +0.2 835,889 - +0.5 836,028 + +0.1 836,029 - +0.5 836,032 + -2.9 836,033 - +0.1 836,152 + +0.3 836,153 - -0.2 836,242 + -0.9 836,262 + ysdE BNILDI_04220 0.28 -0.2 836,296 + ysdE BNILDI_04220 0.73 +0.6 836,299 - ysdE BNILDI_04220 0.77 +0.5
Or see this region's nucleotide sequence