Experiment: D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gmk and rpoZ are separated by 54 nucleotides rpoZ and spoT are separated by 18 nucleotides spoT and trmH are separated by 6 nucleotides trmH and recG are separated by 5 nucleotides
BNILDI_04070: gmk - guanylate kinase, at 803,083 to 803,706
gmk
BNILDI_04075: rpoZ - DNA-directed RNA polymerase subunit omega, at 803,761 to 804,036
rpoZ
BNILDI_04080: spoT - bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 804,055 to 806,163
spoT
BNILDI_04085: trmH - tRNA (guanosine(18)-2'-O)-methyltransferase TrmH, at 806,170 to 806,859
trmH
BNILDI_04090: recG - ATP-dependent DNA helicase RecG, at 806,865 to 808,946
recG
Position (kb) 804
805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 803.720 kb on - strand at 803.756 kb on + strand at 803.760 kb on + strand at 803.760 kb on + strand at 803.903 kb on + strand, within rpoZ at 805.676 kb on + strand, within spoT at 805.995 kb on + strand at 806.103 kb on + strand at 806.169 kb on + strand at 806.170 kb on - strand at 806.185 kb on + strand at 806.370 kb on + strand, within trmH at 806.370 kb on + strand, within trmH at 806.371 kb on - strand, within trmH at 806.680 kb on + strand, within trmH at 806.839 kb on - strand at 806.841 kb on + strand at 806.841 kb on + strand at 806.858 kb on - strand at 806.858 kb on - strand at 806.882 kb on - strand at 806.882 kb on - strand at 806.927 kb on + strand at 806.958 kb on - strand at 806.972 kb on - strand at 806.977 kb on + strand at 806.977 kb on + strand at 806.977 kb on + strand at 807.031 kb on + strand at 807.031 kb on + strand at 807.080 kb on + strand, within recG at 807.081 kb on - strand, within recG at 807.081 kb on - strand, within recG
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose remove 803,720 - -1.0 803,756 + -1.3 803,760 + -2.1 803,760 + -0.4 803,903 + rpoZ BNILDI_04075 0.51 -0.3 805,676 + spoT BNILDI_04080 0.77 +0.5 805,995 + +1.1 806,103 + -0.0 806,169 + -1.1 806,170 - -1.3 806,185 + -0.5 806,370 + trmH BNILDI_04085 0.29 +0.1 806,370 + trmH BNILDI_04085 0.29 +0.4 806,371 - trmH BNILDI_04085 0.29 -0.1 806,680 + trmH BNILDI_04085 0.74 -0.3 806,839 - -0.2 806,841 + +0.8 806,841 + -1.9 806,858 - -1.8 806,858 - -0.7 806,882 - -3.2 806,882 - -0.8 806,927 + -1.0 806,958 - -3.0 806,972 - -0.5 806,977 + -0.3 806,977 + +1.6 806,977 + -2.2 807,031 + -0.8 807,031 + -0.2 807,080 + recG BNILDI_04090 0.10 +0.9 807,081 - recG BNILDI_04090 0.10 -0.3 807,081 - recG BNILDI_04090 0.10 -0.9
Or see this region's nucleotide sequence